Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   SMUNUM_RS09330 Genome accession   NZ_AP014571
Coordinates   1884062..1884376 (-) Length   104 a.a.
NCBI ID   WP_002263437.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1879062..1889376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS09295 tnpA 1879676..1880139 (-) 464 Protein_1786 IS200/IS605 family transposase -
  SMUNUM_RS09300 (SMNUM_1767) - 1880352..1881551 (-) 1200 WP_002263443.1 acetate kinase -
  SMUNUM_RS09305 (SMNUM_1768) comYH 1881610..1882563 (-) 954 WP_019805509.1 class I SAM-dependent methyltransferase Machinery gene
  SMUNUM_RS09310 (SMNUM_1769) comYG 1882618..1883007 (-) 390 WP_019805510.1 competence type IV pilus minor pilin ComGG Machinery gene
  SMUNUM_RS09315 (SMNUM_1770) comYF 1882985..1883419 (-) 435 WP_002263440.1 competence type IV pilus minor pilin ComGF Machinery gene
  SMUNUM_RS09320 (SMNUM_1771) comYE 1883406..1883699 (-) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  SMUNUM_RS09325 (SMNUM_1772) comYD 1883671..1884075 (-) 405 WP_002264246.1 competence type IV pilus minor pilin ComGD Machinery gene
  SMUNUM_RS09330 (SMNUM_1773) comYC 1884062..1884376 (-) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  SMUNUM_RS09335 (SMNUM_1774) comYB 1884376..1885407 (-) 1032 WP_255262721.1 competence type IV pilus assembly protein ComGB Machinery gene
  SMUNUM_RS09340 (SMNUM_1775) comYA 1885343..1886284 (-) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  SMUNUM_RS09345 (SMNUM_1776) - 1886414..1886797 (-) 384 WP_019805511.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11591.60 Da        Isoelectric Point: 10.2206

>NTDB_id=66009 SMUNUM_RS09330 WP_002263437.1 1884062..1884376(-) (comYC) [Streptococcus mutans LP13]
MKKIKRVSVRAFTLIEMLVVLLIISILLLLFVPNLTKQKDKVKDTGGSAVVKVVESQAELYELNKTDSATLSKLVASGDI
TQEQANSYKDYYAKHPSKTRHVAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=66009 SMUNUM_RS09330 WP_002263437.1 1884062..1884376(-) (comYC) [Streptococcus mutans LP13]
ATGAAAAAGATCAAGAGAGTCAGTGTACGGGCTTTTACGCTTATAGAAATGTTAGTAGTTCTTCTCATTATTAGTATTCT
TTTACTATTATTTGTTCCTAATTTAACTAAGCAAAAAGATAAGGTAAAAGATACTGGCGGTTCTGCCGTGGTTAAAGTTG
TAGAAAGTCAGGCTGAGCTTTATGAGCTTAATAAAACCGATTCTGCTACTCTTTCTAAATTAGTAGCTAGTGGTGATATT
ACACAAGAACAGGCAAATTCATACAAGGATTACTATGCAAAACACCCAAGTAAAACACGGCATGTCGCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

100

100

1
  comYC Streptococcus mutans UA159

100

100

1
  comYC Streptococcus gordonii str. Challis substr. CH1

71.429

100

0.721
  comGC/cglC Streptococcus mitis SK321

66.667

95.192

0.635
  comGC/cglC Streptococcus mitis NCTC 12261

69.565

88.462

0.615
  comGC/cglC Streptococcus pneumoniae R6

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae Rx1

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae D39

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae TIGR4

63.636

95.192

0.606
  comGC Lactococcus lactis subsp. cremoris KW2

55.446

97.115

0.538
  comYC Streptococcus suis isolate S10

60.227

84.615

0.51

Multiple sequence alignment