Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MKR81_RS11640 Genome accession   NZ_CP092682
Coordinates   2528468..2528755 (-) Length   95 a.a.
NCBI ID   WP_005425566.1    Uniprot ID   A0A812FIP9
Organism   Vibrio campbellii strain IFL1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2523468..2533755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS11615 (MKR81_11615) - 2523903..2525117 (+) 1215 WP_029788618.1 pyridoxal phosphate-dependent aminotransferase -
  MKR81_RS11620 (MKR81_11620) yfbR 2525201..2525785 (+) 585 WP_005425568.1 5'-deoxynucleotidase -
  MKR81_RS11625 (MKR81_11625) - 2525789..2527123 (+) 1335 WP_240305601.1 anti-phage deoxyguanosine triphosphatase -
  MKR81_RS11630 (MKR81_11630) - 2527144..2527761 (-) 618 WP_240304601.1 DTW domain-containing protein -
  MKR81_RS11635 (MKR81_11635) rrtA 2527765..2528316 (+) 552 WP_077261766.1 rhombosortase -
  MKR81_RS11640 (MKR81_11640) comEA 2528468..2528755 (-) 288 WP_005425566.1 helix-hairpin-helix domain-containing protein Machinery gene
  MKR81_RS11645 (MKR81_11645) ppiD 2528901..2530760 (-) 1860 WP_240304602.1 peptidylprolyl isomerase -
  MKR81_RS11650 (MKR81_11650) - 2530975..2531247 (-) 273 WP_005430934.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10534.24 Da        Isoelectric Point: 5.8692

>NTDB_id=659677 MKR81_RS11640 WP_005425566.1 2528468..2528755(-) (comEA) [Vibrio campbellii strain IFL1]
MKWMLTLCLLILAPMSWAETKTKADKYEGIEITVNVNSATAEEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL

Nucleotide


Download         Length: 288 bp        

>NTDB_id=659677 MKR81_RS11640 WP_005425566.1 2528468..2528755(-) (comEA) [Vibrio campbellii strain IFL1]
ATGAAATGGATGTTAACGCTGTGCTTATTGATACTCGCGCCGATGAGCTGGGCGGAAACAAAGACTAAAGCAGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCAGAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGTCCATTTAAAACCGCTGCGGATCTTACAAAGGTGAAAGGC
ATCGGTGAGGCGACTGTGAAGAAGAACGAAGACCGCATCTTGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(33-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FIP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

96.842

100

0.968
  comEA Vibrio parahaemolyticus RIMD 2210633

80

100

0.8
  comEA Vibrio cholerae C6706

58.333

100

0.589
  comEA Vibrio cholerae strain A1552

58.333

100

0.589
  comE1/comEA Haemophilus influenzae Rd KW20

39.286

100

0.463
  comE Neisseria gonorrhoeae MS11

39.785

97.895

0.389
  comE Neisseria gonorrhoeae MS11

39.785

97.895

0.389
  comE Neisseria gonorrhoeae MS11

39.785

97.895

0.389
  comE Neisseria gonorrhoeae MS11

39.785

97.895

0.389
  comEA Acinetobacter baylyi ADP1

48.649

77.895

0.379
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.263

0.368