Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SRAA_RS08235 Genome accession   NZ_AP014568
Coordinates   1759708..1760925 (+) Length   405 a.a.
NCBI ID   WP_045533567.1    Uniprot ID   A0A060NPP2
Organism   Serpentinimonas raichei strain A1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1754708..1765925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRAA_RS08215 (SRAA_1640) prmA 1754947..1755831 (-) 885 WP_045533565.1 50S ribosomal protein L11 methyltransferase -
  SRAA_RS08220 (SRAA_1641) accC 1755944..1757293 (-) 1350 WP_045532033.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  SRAA_RS08225 (SRAA_1642) accB 1757307..1757780 (-) 474 WP_045532034.1 acetyl-CoA carboxylase biotin carboxyl carrier protein -
  SRAA_RS08230 (SRAA_1643) pilB 1757936..1759666 (+) 1731 WP_045532035.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SRAA_RS08235 (SRAA_1644) pilC 1759708..1760925 (+) 1218 WP_045533567.1 type II secretion system F family protein Machinery gene
  SRAA_RS12310 (SRAA_1645) hemP 1761092..1761274 (+) 183 WP_144318741.1 hemin uptake protein HemP -
  SRAA_RS08245 (SRAA_1646) - 1761431..1763740 (+) 2310 WP_045532040.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  SRAA_RS08250 (SRAA_1647) - 1763757..1764836 (+) 1080 WP_045533569.1 hemin-degrading factor -
  SRAA_RS08255 (SRAA_1648) - 1764833..1765756 (+) 924 WP_045532042.1 heme/hemin ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44272.95 Da        Isoelectric Point: 9.6812

>NTDB_id=65929 SRAA_RS08235 WP_045533567.1 1759708..1760925(+) (pilC) [Serpentinimonas raichei strain A1]
MATATTKGIKEFVFEWEGKDRNGKPVRGEVRAAGENQVQATLRRQGVLVQKVKKRRTASTKRIKPKDIAIFTRQLATMMK
AGVPLLQSFDIVGRGNPNPSVNKLLNQIRTDVETGTSLSAAFRKHPMYFNALYCNLVEAGEAAGILEDLLDRLASYMEKT
EAIKSKVKSALMYPTAVVVVAFIVVVVIMIFVIPAFEEVFSSFGADLPAPTMLVIAISDFFVAYWWIVFGALGGGGYFFM
QAWKRNVKVQRVMDRLLLKMPVFGTLVEKSTVARWTRTLSTMFAAGVPLVEALDSVGGASGNSLYADATTQIQREISTGT
SLTMAMNNARIFPSMVLQMTAIGEESGALDHMLGKAADFYEQEVDDMVAGLSSLMEPIIIVVLGVIIGGIVVSMYLPIFQ
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=65929 SRAA_RS08235 WP_045533567.1 1759708..1760925(+) (pilC) [Serpentinimonas raichei strain A1]
ATGGCAACGGCGACCACCAAGGGCATCAAAGAATTTGTATTTGAGTGGGAGGGCAAAGACCGCAATGGCAAACCCGTGCG
GGGTGAGGTGCGCGCCGCCGGTGAAAACCAGGTGCAAGCCACGCTGCGCCGCCAGGGCGTGCTGGTGCAAAAGGTTAAAA
AACGCCGCACCGCCTCGACCAAGCGCATAAAACCCAAAGACATCGCCATTTTTACGCGCCAACTGGCCACCATGATGAAA
GCCGGCGTGCCGCTGCTGCAATCCTTTGACATCGTCGGGCGCGGCAACCCCAACCCGAGTGTGAACAAGCTGCTCAACCA
GATTCGCACCGATGTGGAAACCGGCACCTCGCTCAGCGCCGCCTTTCGCAAGCATCCGATGTACTTCAACGCGCTCTACT
GCAACTTGGTGGAAGCGGGCGAGGCGGCCGGCATTCTGGAAGATCTGCTGGACCGGCTGGCCAGCTACATGGAAAAAACC
GAGGCCATCAAGAGCAAGGTCAAGTCGGCCCTGATGTACCCTACGGCGGTGGTCGTGGTCGCCTTCATCGTGGTGGTGGT
GATCATGATCTTTGTCATCCCGGCCTTCGAGGAGGTGTTCTCATCCTTTGGCGCTGATCTGCCGGCACCGACCATGCTGG
TGATCGCCATCAGCGATTTTTTCGTGGCTTACTGGTGGATTGTTTTTGGCGCTCTGGGCGGCGGGGGTTACTTTTTCATG
CAAGCCTGGAAGCGCAACGTCAAAGTGCAGCGGGTGATGGACCGGCTGCTGCTGAAAATGCCGGTTTTTGGCACGCTGGT
AGAAAAGTCCACCGTGGCGCGCTGGACCCGCACCCTGTCCACCATGTTCGCCGCCGGGGTGCCGCTGGTGGAGGCGCTCG
ATTCCGTCGGCGGGGCTTCGGGCAACAGCCTGTATGCCGACGCTACCACGCAAATCCAGCGCGAAATCTCCACTGGCACC
AGCCTGACCATGGCCATGAACAATGCCCGCATCTTCCCCTCCATGGTGCTGCAGATGACCGCCATTGGCGAAGAATCGGG
CGCACTCGACCACATGCTGGGCAAGGCGGCCGACTTTTATGAGCAGGAAGTCGATGACATGGTGGCCGGCCTCTCGAGCC
TGATGGAGCCCATCATCATCGTGGTGCTGGGGGTGATCATCGGCGGCATCGTGGTCTCGATGTACCTGCCGATCTTCCAA
CTCGGGCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060NPP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.478

99.259

0.541
  pilG Neisseria gonorrhoeae MS11

52.632

98.519

0.519
  pilG Neisseria meningitidis 44/76-A

52.381

98.519

0.516
  pilC Legionella pneumophila strain ERS1305867

50.758

97.778

0.496
  pilC Acinetobacter baumannii D1279779

48.615

98.025

0.477
  pilC Acinetobacter baylyi ADP1

47.99

98.272

0.472
  pilC Vibrio cholerae strain A1552

41.855

98.519

0.412
  pilC Thermus thermophilus HB27

39.13

100

0.4
  pilC Vibrio campbellii strain DS40M4

39.599

98.519

0.39

Multiple sequence alignment