Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG235_RS35700 Genome accession   NZ_CP108298
Coordinates   8041931..8042611 (+) Length   226 a.a.
NCBI ID   WP_326582804.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00024     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 8036931..8047611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG235_RS35675 (OG235_35635) - 8038562..8038756 (+) 195 WP_033526477.1 hypothetical protein -
  OG235_RS35690 (OG235_35650) tig 8039384..8040775 (+) 1392 WP_326582803.1 trigger factor -
  OG235_RS35695 (OG235_35655) clpP 8041180..8041788 (+) 609 WP_189709844.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG235_RS35700 (OG235_35660) clpP 8041931..8042611 (+) 681 WP_326582804.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG235_RS35705 (OG235_35665) clpX 8042815..8044101 (+) 1287 WP_005479362.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG235_RS35710 (OG235_35670) - 8044267..8045217 (-) 951 WP_327729709.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25053.47 Da        Isoelectric Point: 4.5790

>NTDB_id=658339 OG235_RS35700 WP_326582804.1 8041931..8042611(+) (clpP) [Streptomyces sp. NBC_00024]
MNDFPGSGIYARTEAEYTGPRAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRGQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=658339 OG235_RS35700 WP_326582804.1 8041931..8042611(+) (clpP) [Streptomyces sp. NBC_00024]
GTGAACGACTTCCCCGGCAGCGGCATCTACGCCCGCACCGAGGCCGAGTACACCGGCCCCCGCGCCGAGTCCCGCTATGT
CATCCCCCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGTGAGTACGACCCGTACGCCAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCGCTCACGGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGTATGGCGCTGCCGAACGCCCGCGTCCTGATCCACCAGCCGTACAGCGAGACGGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGTGGGCAGCTGGAGGACATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCCGAGGACGCCCTGGCCTACGGCCTGATCGACCAGA
TCATCTCGACGCGGAAGATGAACAACGCGGACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376