Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG235_RS35695 Genome accession   NZ_CP108298
Coordinates   8041180..8041788 (+) Length   202 a.a.
NCBI ID   WP_189709844.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00024     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 8036180..8046788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG235_RS35665 (OG235_35625) - 8036276..8036761 (+) 486 WP_327729708.1 HD domain-containing protein -
  OG235_RS35670 (OG235_35630) - 8036780..8037982 (-) 1203 WP_405961158.1 acyltransferase family protein -
  OG235_RS35675 (OG235_35635) - 8038562..8038756 (+) 195 WP_033526477.1 hypothetical protein -
  OG235_RS35690 (OG235_35650) tig 8039384..8040775 (+) 1392 WP_326582803.1 trigger factor -
  OG235_RS35695 (OG235_35655) clpP 8041180..8041788 (+) 609 WP_189709844.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG235_RS35700 (OG235_35660) clpP 8041931..8042611 (+) 681 WP_326582804.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG235_RS35705 (OG235_35665) clpX 8042815..8044101 (+) 1287 WP_005479362.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG235_RS35710 (OG235_35670) - 8044267..8045217 (-) 951 WP_327729709.1 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21375.28 Da        Isoelectric Point: 4.6747

>NTDB_id=658338 OG235_RS35695 WP_189709844.1 8041180..8041788(+) (clpP) [Streptomyces sp. NBC_00024]
MPYAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQF
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVE
QVTRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=658338 OG235_RS35695 WP_189709844.1 8041180..8041788(+) (clpP) [Streptomyces sp. NBC_00024]
ATGCCCTACGCCGCCGGCGAGCCTTCCATCGGCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTTGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATTGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCGGACCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACGATGCAGTTC
ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCGTCCGCCGGTCTGGCCGGCTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCGGAGCTCACCTCCCAGCACACGGGTCAGACCGTCGAG
CAGGTGACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CCCCACGGCCGCCGGCATGCCGGGCGGCGGCGGTACCGGGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.48

84.653

0.495
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.356

94.554

0.495
  clpP Lactococcus lactis subsp. cremoris KW2

53.261

91.089

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.717

91.089

0.48
  clpP Streptococcus mutans UA159

55.491

85.644

0.475
  clpP Streptococcus pyogenes MGAS315

52.601

85.644

0.45
  clpP Streptococcus pyogenes JRS4

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMG 18311

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMD-9

52.601

85.644

0.45
  clpP Streptococcus pneumoniae Rx1

52.023

85.644

0.446
  clpP Streptococcus pneumoniae D39

52.023

85.644

0.446
  clpP Streptococcus pneumoniae R6

52.023

85.644

0.446
  clpP Streptococcus pneumoniae TIGR4

52.023

85.644

0.446