NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OHA65_RS13795	Genome accession	NZ_CP108271
Coordinates	2940503..2941174 (-)	Length	223 a.a.
NCBI ID	WP_323179072.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00045
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2935503..2946174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHA65_RS13785 (OHA65_13710)	-	2938006..2938950 (+)	945	WP_327283422.1	hypothetical protein	-
OHA65_RS13790 (OHA65_13715)	clpX	2939063..2940349 (-)	1287	WP_030297265.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHA65_RS13795 (OHA65_13720)	clpP	2940503..2941174 (-)	672	WP_323179072.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHA65_RS13800 (OHA65_13725)	clpP	2941261..2941878 (-)	618	WP_327283423.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHA65_RS13805 (OHA65_13730)	tig	2942211..2943593 (-)	1383	WP_327283424.1	trigger factor	-
OHA65_RS13820 (OHA65_13745)	-	2944187..2944686 (+)	500	Protein_2735	replication initiator	-
OHA65_RS13825 (OHA65_13750)	-	2944679..2944879 (+)	201	WP_327283425.1	excisionase family DNA-binding protein	-
OHA65_RS13830 (OHA65_13755)	-	2945120..2945449 (+)	330	WP_328762749.1	tyrosine-type recombinase/integrase	-
OHA65_RS13835 (OHA65_13760)	-	2945537..2945897 (+)	361	Protein_2738	NUDIX hydrolase	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 24586.05 Da Isoelectric Point: 4.9265

                                >NTDB_id=657864 OHA65_RS13795 WP_323179072.1 2940503..2941174(-) (clpP) [Streptomyces sp. NBC_00045]

MVNTQMHMNNLSPASGLYTGAPVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD

PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLS

DLEIAAREILRMRDQLETMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide

Download Length: 672 bp

                                >NTDB_id=657864 OHA65_RS13795 WP_323179072.1 2940503..2941174(-) (clpP) [Streptomyces sp. NBC_00045]

ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCGCCGGTGGACAACCGCTA

CGTCGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG

TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC

CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTGACGGCCATCTACGACACGATGCA

GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTGGCCGCAGGCACCC

CCGGCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGCGAGCAGCTCTCC

GACCTGGAGATCGCGGCCAGGGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACCACGCC

GATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACC

AGATCGTCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.632	85.202	0.448
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.468	84.305	0.417
clpP	Streptococcus thermophilus LMD-9	45.876	86.996	0.399
clpP	Streptococcus pyogenes JRS4	45.876	86.996	0.399
clpP	Streptococcus pyogenes MGAS315	45.876	86.996	0.399
clpP	Streptococcus thermophilus LMG 18311	45.876	86.996	0.399
clpP	Streptococcus mutans UA159	46.316	85.202	0.395
clpP	Lactococcus lactis subsp. cremoris KW2	46.073	85.65	0.395
clpP	Streptococcus pneumoniae D39	45.55	85.65	0.39
clpP	Streptococcus pneumoniae TIGR4	45.55	85.65	0.39
clpP	Streptococcus pneumoniae R6	45.55	85.65	0.39
clpP	Streptococcus pneumoniae Rx1	45.55	85.65	0.39
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	45.026	85.65	0.386

Detailed information NTG0657864