Detailed information NTG0657863

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHA65_RS13790
• Genome accession: NZ_CP108271
• Coordinates: 2939063..2940349 (-)
• Length: 428 a.a.
• NCBI ID: WP_030297265.1
• Uniprot ID: A0ABN0VAM4
• Organism: Streptomyces sp. NBC_00045
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2934063..2945349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHA65_RS13780 (OHA65_13705)	-	2935255..2937876 (-)	2622	WP_327283421.1	valine--tRNA ligase	-
OHA65_RS13785 (OHA65_13710)	-	2938006..2938950 (+)	945	WP_327283422.1	hypothetical protein	-
OHA65_RS13790 (OHA65_13715)	clpX	2939063..2940349 (-)	1287	WP_030297265.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHA65_RS13795 (OHA65_13720)	clpP	2940503..2941174 (-)	672	WP_323179072.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHA65_RS13800 (OHA65_13725)	clpP	2941261..2941878 (-)	618	WP_327283423.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHA65_RS13805 (OHA65_13730)	tig	2942211..2943593 (-)	1383	WP_327283424.1	trigger factor	-
OHA65_RS13820 (OHA65_13745)	-	2944187..2944686 (+)	500	Protein_2735	replication initiator	-
OHA65_RS13825 (OHA65_13750)	-	2944679..2944879 (+)	201	WP_327283425.1	excisionase family DNA-binding protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46909.81 Da
• Isoelectric Point: 4.7271

>NTDB_id=657863 OHA65_RS13790 WP_030297265.1 2939063..2940349(-) (clpX) [Streptomyces sp. NBC_00045]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVRSNVNPTLVPRIVPKDQGPQEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=657863 OHA65_RS13790 WP_030297265.1 2939063..2940349(-) (clpX) [Streptomyces sp. NBC_00045]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAGGAGCTCGCGGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCTCGCGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCGCTCTCGGTGGCGGTCTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
TGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGCCCGACGGGCTCCGGCAAGACGCTGCTCGCCCAAA
CGCTCGCGCGCATGCTCAACGTCCCGTTCGCCATCGCTGACGCGACGGCGCTGACGGAGGCCGGGTACGTGGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTGAGCGGTGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACGACGGCTTCGGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGTGCGGGCGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCGGAGTTCATCGGCCGTCTGCCCGTCATCACTTCGGTGCACAACCTGGACCGC
GAGGCGCTGCTGCAGATCCTGGTGGAGCCGCGGAACGCGCTGGTGAAGCAGTACCAGCGGCTGTTCGAACTCGACGGCGT
CGAGCTGGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCGGACCAGGCGATCCTCCGCCAGACGGGCGCGCGCGGCCTGC
GCGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACG
GCGGACGTCGTCCGCTCGAACGTCAACCCGACGCTGGTCCCGCGCATCGTCCCGAAGGACCAGGGCCCGCAGGAGAAGTC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	93.925	0.598
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.015	96.028	0.519