Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG816_RS13820 Genome accession   NZ_CP108244
Coordinates   2949814..2950485 (-) Length   223 a.a.
NCBI ID   WP_323179072.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00073     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2944814..2955485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG816_RS13810 (OG816_13800) - 2947329..2948261 (+) 933 WP_328762748.1 hypothetical protein -
  OG816_RS13815 (OG816_13805) clpX 2948374..2949660 (-) 1287 WP_030297265.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG816_RS13820 (OG816_13810) clpP 2949814..2950485 (-) 672 WP_323179072.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG816_RS13825 (OG816_13815) clpP 2950572..2951189 (-) 618 WP_327283423.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG816_RS13830 (OG816_13820) tig 2951522..2952904 (-) 1383 WP_327283424.1 trigger factor -
  OG816_RS13845 (OG816_13835) - 2953498..2953997 (+) 500 Protein_2741 replication initiator -
  OG816_RS13850 (OG816_13840) - 2953990..2954190 (+) 201 WP_405756064.1 excisionase family DNA-binding protein -
  OG816_RS13855 (OG816_13845) - 2954431..2955453 (+) 1023 WP_405756066.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24586.05 Da        Isoelectric Point: 4.9265

>NTDB_id=657217 OG816_RS13820 WP_323179072.1 2949814..2950485(-) (clpP) [Streptomyces sp. NBC_00073]
MVNTQMHMNNLSPASGLYTGAPVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLS
DLEIAAREILRMRDQLETMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide


Download         Length: 672 bp        

>NTDB_id=657217 OG816_RS13820 WP_323179072.1 2949814..2950485(-) (clpP) [Streptomyces sp. NBC_00073]
ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCGCCGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTGACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTGGCCGCAGGCACCC
CCGGCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAGGGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACCACGCC
GATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACC
AGATCGTCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

85.202

0.448
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

84.305

0.417
  clpP Streptococcus thermophilus LMD-9

45.876

86.996

0.399
  clpP Streptococcus pyogenes JRS4

45.876

86.996

0.399
  clpP Streptococcus pyogenes MGAS315

45.876

86.996

0.399
  clpP Streptococcus thermophilus LMG 18311

45.876

86.996

0.399
  clpP Streptococcus mutans UA159

46.316

85.202

0.395
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

85.65

0.395
  clpP Streptococcus pneumoniae D39

45.55

85.65

0.39
  clpP Streptococcus pneumoniae TIGR4

45.55

85.65

0.39
  clpP Streptococcus pneumoniae R6

45.55

85.65

0.39
  clpP Streptococcus pneumoniae Rx1

45.55

85.65

0.39
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

85.65

0.386