NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG816_RS13825	Genome accession	NZ_CP108244
Coordinates	2950572..2951189 (-)	Length	205 a.a.
NCBI ID	WP_327283423.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00073
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2945572..2956189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG816_RS13810 (OG816_13800)	-	2947329..2948261 (+)	933	WP_328762748.1	hypothetical protein	-
OG816_RS13815 (OG816_13805)	clpX	2948374..2949660 (-)	1287	WP_030297265.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG816_RS13820 (OG816_13810)	clpP	2949814..2950485 (-)	672	WP_323179072.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG816_RS13825 (OG816_13815)	clpP	2950572..2951189 (-)	618	WP_327283423.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG816_RS13830 (OG816_13820)	tig	2951522..2952904 (-)	1383	WP_327283424.1	trigger factor	-
OG816_RS13845 (OG816_13835)	-	2953498..2953997 (+)	500	Protein_2741	replication initiator	-
OG816_RS13850 (OG816_13840)	-	2953990..2954190 (+)	201	WP_405756064.1	excisionase family DNA-binding protein	-
OG816_RS13855 (OG816_13845)	-	2954431..2955453 (+)	1023	WP_405756066.1	NUDIX domain-containing protein	-
OG816_RS13860 (OG816_13850)	-	2955603..2956109 (-)	507	WP_327283426.1	hypothetical protein	-

Sequence

Protein

Download Length: 205 a.a. Molecular weight: 21670.59 Da Isoelectric Point: 4.5831

                                >NTDB_id=657218 OG816_RS13825 WP_327283423.1 2950572..2951189(-) (clpP) [Streptomyces sp. NBC_00073]

MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDVYLYINSPGGSVTAGMAVYD

TMQYIPNDVVTIGMGMAASMGQFLLTGGAPGKRFALPNTDILMHQGSAGIGGTASDIKIQAEYLLRTKQRMAEITAHHSG

QTVEAIIRDGDRDRWFTAEEAKEYGLIDEIISAASLVPGGGGTGA

Nucleotide

Download Length: 618 bp

                                >NTDB_id=657218 OG816_RS13825 WP_327283423.1 2950572..2951189(-) (clpP) [Streptomyces sp. NBC_00073]

GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT

CGGCGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCGAACAAGATCACGGCGCAGCTCCTCCTCCTGG

CCGCGGAGCCGGAGAAGGACGTCTACCTGTACATCAACAGCCCGGGCGGCTCGGTGACGGCGGGCATGGCGGTCTACGAC

ACCATGCAGTACATCCCGAACGACGTCGTCACCATCGGCATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGG

CGGCGCCCCGGGCAAGCGCTTCGCGCTCCCGAACACGGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGCACCG

CCTCGGACATCAAGATCCAGGCCGAGTACCTGCTGCGCACGAAGCAGCGCATGGCCGAGATCACCGCCCACCACTCCGGC

CAGACCGTGGAGGCGATCATCCGCGACGGCGACCGCGACCGCTGGTTCACCGCGGAGGAGGCCAAGGAGTACGGCCTCAT

CGACGAGATCATCTCCGCCGCGTCGCTGGTCCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.356	93.171	0.488
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.579	92.683	0.478
clpP	Lactococcus lactis subsp. cremoris KW2	50.265	92.195	0.463
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	49.735	92.195	0.459
clpP	Streptococcus mutans UA159	51.124	86.829	0.444
clpP	Streptococcus pneumoniae TIGR4	50.562	86.829	0.439
clpP	Streptococcus pneumoniae Rx1	50.562	86.829	0.439
clpP	Streptococcus pneumoniae D39	50.562	86.829	0.439
clpP	Streptococcus pneumoniae R6	50.562	86.829	0.439
clpP	Streptococcus thermophilus LMG 18311	49.438	86.829	0.429
clpP	Streptococcus thermophilus LMD-9	49.438	86.829	0.429
clpP	Streptococcus pyogenes JRS4	49.438	86.829	0.429
clpP	Streptococcus pyogenes MGAS315	49.438	86.829	0.429

Detailed information NTG0657218