Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MJP36_RS26010 Genome accession   NZ_CP092411
Coordinates   5785697..5786905 (+) Length   402 a.a.
NCBI ID   WP_244384369.1    Uniprot ID   -
Organism   Pseudomonas palleroniana strain Q1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5780697..5791905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJP36_RS25985 (MJP36_25985) - 5781057..5783213 (-) 2157 WP_244384366.1 DUF1631 domain-containing protein -
  MJP36_RS25990 (MJP36_25990) nadC 5783453..5784301 (+) 849 WP_090366842.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MJP36_RS25995 (MJP36_25995) - 5784448..5784753 (-) 306 WP_244384367.1 DUF6388 family protein -
  MJP36_RS26005 (MJP36_26005) - 5785080..5785493 (-) 414 WP_161548354.1 pilin -
  MJP36_RS26010 (MJP36_26010) pilC 5785697..5786905 (+) 1209 WP_244384369.1 type II secretion system F family protein Machinery gene
  MJP36_RS26015 (MJP36_26015) pilD 5786902..5787768 (+) 867 WP_161548295.1 prepilin peptidase Machinery gene
  MJP36_RS26020 (MJP36_26020) coaE 5787765..5788388 (+) 624 WP_060754868.1 dephospho-CoA kinase -
  MJP36_RS26025 (MJP36_26025) yacG 5788385..5788585 (+) 201 WP_060754867.1 DNA gyrase inhibitor YacG -
  MJP36_RS26030 (MJP36_26030) - 5788582..5788797 (-) 216 WP_003171680.1 hypothetical protein -
  MJP36_RS26035 (MJP36_26035) - 5788863..5789552 (-) 690 WP_161548296.1 energy-coupling factor ABC transporter permease -
  MJP36_RS26040 (MJP36_26040) - 5789681..5790310 (+) 630 WP_053254334.1 DUF1780 domain-containing protein -
  MJP36_RS26045 (MJP36_26045) - 5790400..5790573 (+) 174 WP_244384371.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43293.94 Da        Isoelectric Point: 10.0194

>NTDB_id=657198 MJP36_RS26010 WP_244384369.1 5785697..5786905(+) (pilC) [Pseudomonas palleroniana strain Q1]
MNDASTIYAWEGINRKGRRVSGKTTGHDLASIKAQLRRQGICPGRVCKQAQGMPMLAPAIKPADIALFTRQLATLLTAGI
PLLQAFDIIRESVENQQLRELLKGLKQEIAAGTNLAAALRKHPRYFDDLYCNLIAAGEQAGALETLLERVAIHLEKSQRL
KVRVKKAMTYPIAILVVATLVSTVLLVHVVPQFQNLFAGVDSPLPGFTLWVIALSEFLQRAWWLVALSLGATTAGLRLAH
RASPGFRYRLEAGLLKLPLAGTLLKKSAIARYARTLSTTFAAGVPLVQALSSAAGAVGIGPFKQAIERMRHDVSTGMQLN
HCMAASGLFPGMAVQMTAIGEESGTLDGMLEKVASHYEADVDHLVDNLTSLMEPLIMVVLGGIVGALVLAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=657198 MJP36_RS26010 WP_244384369.1 5785697..5786905(+) (pilC) [Pseudomonas palleroniana strain Q1]
ATGAACGACGCTTCGACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGGCGCAGGGTGAGCGGAAAAACCACCGGTCA
CGACCTTGCATCAATCAAGGCCCAACTGCGCCGGCAAGGGATCTGCCCCGGTCGCGTATGCAAGCAAGCCCAGGGTATGC
CAATGCTCGCTCCTGCAATAAAGCCCGCCGATATTGCGCTGTTCACTCGCCAGCTGGCGACGCTGCTGACGGCCGGCATC
CCCTTGCTGCAGGCGTTCGATATCATTCGTGAAAGCGTCGAAAACCAACAGCTGCGCGAACTGCTCAAGGGGCTGAAACA
GGAGATTGCCGCCGGCACCAATCTGGCTGCCGCACTGCGCAAGCACCCGCGCTACTTCGATGACTTGTATTGCAACCTGA
TCGCCGCCGGAGAACAAGCCGGCGCCCTGGAAACCCTACTGGAGCGCGTGGCAATCCATCTGGAAAAAAGCCAACGGCTC
AAGGTCAGGGTCAAGAAAGCCATGACCTACCCTATCGCGATCCTGGTGGTTGCCACTCTGGTCAGTACGGTGCTGCTGGT
CCATGTAGTGCCGCAGTTCCAGAACCTGTTCGCGGGGGTCGACAGTCCCTTGCCCGGCTTTACCCTGTGGGTCATTGCCT
TGTCCGAATTCCTGCAGCGTGCCTGGTGGTTAGTGGCACTGAGCCTGGGCGCGACAACTGCCGGGCTACGCCTGGCCCAT
CGGGCGTCTCCGGGCTTTCGTTACAGGCTGGAAGCGGGTTTGTTGAAACTGCCCCTGGCGGGCACACTGCTGAAGAAGTC
CGCCATCGCCCGCTACGCCCGTACGCTCTCGACTACCTTTGCAGCAGGCGTGCCGCTGGTGCAGGCCTTGAGCTCGGCAG
CCGGCGCCGTCGGCATTGGCCCCTTCAAACAGGCAATCGAACGTATGCGCCATGATGTCTCCACCGGCATGCAACTGAAT
CACTGCATGGCCGCCAGCGGTTTGTTTCCAGGCATGGCGGTCCAGATGACAGCCATCGGTGAAGAGTCCGGCACGCTGGA
TGGCATGCTGGAAAAAGTCGCGAGCCATTACGAGGCCGATGTGGACCACCTGGTCGATAACCTCACCAGCCTGATGGAGC
CCCTGATCATGGTGGTGCTGGGCGGTATTGTCGGCGCGTTGGTCCTTGCCATGTACCTGCCGGTCTTCCAATTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.03

99.005

0.555
  pilC Acinetobacter baylyi ADP1

50.505

98.507

0.498
  pilC Acinetobacter baumannii D1279779

48.608

98.259

0.478
  pilC Legionella pneumophila strain ERS1305867

47.355

98.756

0.468
  pilG Neisseria gonorrhoeae MS11

40.314

95.025

0.383
  pilG Neisseria meningitidis 44/76-A

40.052

95.025

0.381
  pilC Vibrio cholerae strain A1552

38.579

98.01

0.378
  pilC Thermus thermophilus HB27

37.157

99.751

0.371
  pilC Vibrio campbellii strain DS40M4

37.817

98.01

0.371