Detailed information NTG0657199

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MJP36_RS26015
• Genome accession: NZ_CP092411
• Coordinates: 5786902..5787768 (+)
• Length: 288 a.a.
• NCBI ID: WP_161548295.1
• Uniprot ID: -
• Organism: Pseudomonas palleroniana strain Q1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5781902..5792768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MJP36_RS25990 (MJP36_25990)	nadC	5783453..5784301 (+)	849	WP_090366842.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MJP36_RS25995 (MJP36_25995)	-	5784448..5784753 (-)	306	WP_244384367.1	DUF6388 family protein	-
MJP36_RS26005 (MJP36_26005)	-	5785080..5785493 (-)	414	WP_161548354.1	pilin	-
MJP36_RS26010 (MJP36_26010)	pilC	5785697..5786905 (+)	1209	WP_244384369.1	type II secretion system F family protein	Machinery gene
MJP36_RS26015 (MJP36_26015)	pilD	5786902..5787768 (+)	867	WP_161548295.1	prepilin peptidase	Machinery gene
MJP36_RS26020 (MJP36_26020)	coaE	5787765..5788388 (+)	624	WP_060754868.1	dephospho-CoA kinase	-
MJP36_RS26025 (MJP36_26025)	yacG	5788385..5788585 (+)	201	WP_060754867.1	DNA gyrase inhibitor YacG	-
MJP36_RS26030 (MJP36_26030)	-	5788582..5788797 (-)	216	WP_003171680.1	hypothetical protein	-
MJP36_RS26035 (MJP36_26035)	-	5788863..5789552 (-)	690	WP_161548296.1	energy-coupling factor ABC transporter permease	-
MJP36_RS26040 (MJP36_26040)	-	5789681..5790310 (+)	630	WP_053254334.1	DUF1780 domain-containing protein	-
MJP36_RS26045 (MJP36_26045)	-	5790400..5790573 (+)	174	WP_244384371.1	DUF3094 family protein	-
MJP36_RS26050 (MJP36_26050)	-	5790634..5791932 (+)	1299	WP_244384373.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31730.92 Da
• Isoelectric Point: 8.3907

>NTDB_id=657199 MJP36_RS26015 WP_161548295.1 5786902..5787768(+) (pilD) [Pseudomonas palleroniana strain Q1]
MSRLLTELPWAFVATALVLGLIVGSFLNVLVWRLPKMLEREWRAQANELLGLPTAPVGPAYNLMRPNSCCPRCNQPIRPW
QNIPLLSYVMLRGRCAHCREPISARYPLTELACALISAVTAWHFGFGWQAGAVMLLSWGLLAMSLIDAEHQLLPDVLVLP
LLWLGLILNSNGLLATLPDALWGAVTGYMSLWTVFWLFKLITGKDGMGHGDFKLLALLGAWGGWQILPMTLLLASLLGVS
AGLMLMHLRKSDVSTPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=657199 MJP36_RS26015 WP_161548295.1 5786902..5787768(+) (pilD) [Pseudomonas palleroniana strain Q1]
TTGAGCAGGCTGCTCACTGAGCTTCCCTGGGCCTTCGTTGCAACGGCACTGGTGCTCGGCCTGATCGTCGGCAGCTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTGGAACGGGAATGGCGTGCCCAGGCCAACGAACTCCTCGGACTGCCAA
CTGCGCCTGTCGGGCCTGCCTATAACCTGATGCGCCCCAATTCCTGCTGCCCGCGGTGCAACCAACCGATTCGCCCCTGG
CAAAATATCCCACTGCTCAGCTACGTGATGCTCAGGGGGCGCTGCGCCCATTGTCGCGAGCCCATCAGCGCCCGCTACCC
GTTGACTGAACTGGCCTGCGCACTCATTTCGGCCGTCACTGCCTGGCACTTCGGTTTCGGCTGGCAAGCAGGCGCAGTGA
TGCTGCTGAGTTGGGGCTTACTGGCCATGAGCCTGATCGATGCAGAGCATCAACTGCTGCCCGACGTGCTCGTGCTGCCA
CTGTTATGGCTGGGGCTGATCCTCAACAGCAATGGCCTGCTGGCGACACTGCCCGATGCGCTGTGGGGCGCGGTCACGGG
CTATATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGTTGATCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAAT
TACTGGCCCTGCTCGGCGCCTGGGGGGGTTGGCAGATTCTGCCGATGACGCTGCTGTTGGCGTCGCTGCTGGGGGTGTCT
GCCGGGCTGATGCTGATGCACTTGCGCAAGTCCGACGTATCGACGCCGATGCCATTTGGTCCTTGCCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	98.611	0.517
pilD	Vibrio campbellii strain DS40M4	49.11	97.569	0.479
pilD	Acinetobacter nosocomialis M2	46.831	98.611	0.462
pilD	Acinetobacter baumannii D1279779	46.831	98.611	0.462
pilD	Neisseria gonorrhoeae MS11	47.407	93.75	0.444