Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG787_RS33170 Genome accession   NZ_CP108243
Coordinates   7570067..7570684 (+) Length   205 a.a.
NCBI ID   WP_235480148.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00075     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7565067..7575684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG787_RS33140 (OG787_33035) - 7565351..7566535 (-) 1185 WP_405537667.1 cation:proton antiporter -
  OG787_RS33145 (OG787_33040) - 7566667..7567149 (+) 483 WP_405537668.1 HD domain-containing protein -
  OG787_RS33150 (OG787_33045) - 7567355..7567549 (+) 195 WP_006383514.1 hypothetical protein -
  OG787_RS33165 (OG787_33060) tig 7568095..7569489 (+) 1395 WP_369036221.1 trigger factor -
  OG787_RS33170 (OG787_33065) clpP 7570067..7570684 (+) 618 WP_235480148.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG787_RS33175 (OG787_33070) clpP 7570735..7571433 (+) 699 WP_235479130.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG787_RS33180 (OG787_33075) clpX 7571629..7572915 (+) 1287 WP_235479131.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG787_RS33185 (OG787_33080) - 7573001..7573960 (-) 960 WP_369036222.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21430.27 Da        Isoelectric Point: 4.6747

>NTDB_id=657151 OG787_RS33170 WP_235480148.1 7570067..7570684(+) (clpP) [Streptomyces sp. NBC_00075]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIYDTMQ
FIKNDVMTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAQHTGQTV
EQVTRDSDRDRWFDPEEAKAYGLIDDVIATAAGIPGGGGTGGAGS

Nucleotide


Download         Length: 618 bp        

>NTDB_id=657151 OG787_RS33170 WP_235480148.1 7570067..7570684(+) (clpP) [Streptomyces sp. NBC_00075]
ATGCCTTCCGCCGCCGGCGAGCCTTCCATCGGCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCGCAGCTGCTGCTTCTCGCCGCCGCTGACC
CGGACAAGGACATCAACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAG
TTCATCAAGAACGACGTGATGACGATCGCCATGGGCCTCGCGGCCTCCATGGGCCAGTTCCTGCTCAGCGCGGGCACGCC
CGGCAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCCGGTTCGGCCTCGGACA
TCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACGGCACAGCACACCGGCCAGACCGTC
GAGCAGGTCACCCGGGACTCGGACCGCGACCGCTGGTTCGACCCCGAGGAGGCCAAGGCGTACGGCCTCATCGACGACGT
GATCGCCACGGCCGCAGGCATCCCGGGCGGCGGCGGCACCGGTGGTGCGGGCTCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.48

83.415

0.488
  clpP Lactococcus lactis subsp. cremoris KW2

52.174

89.756

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.747

88.78

0.468
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.63

89.756

0.463
  clpP Streptococcus mutans UA159

53.757

84.39

0.454
  clpP Streptococcus pyogenes JRS4

53.179

84.39

0.449
  clpP Streptococcus pyogenes MGAS315

53.179

84.39

0.449
  clpP Streptococcus thermophilus LMD-9

51.445

84.39

0.434
  clpP Streptococcus thermophilus LMG 18311

51.445

84.39

0.434
  clpP Streptococcus pneumoniae R6

51.149

84.878

0.434
  clpP Streptococcus pneumoniae TIGR4

51.149

84.878

0.434
  clpP Streptococcus pneumoniae Rx1

51.149

84.878

0.434
  clpP Streptococcus pneumoniae D39

51.149

84.878

0.434