Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG787_RS33175 Genome accession   NZ_CP108243
Coordinates   7570735..7571433 (+) Length   232 a.a.
NCBI ID   WP_235479130.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00075     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7565735..7576433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG787_RS33145 (OG787_33040) - 7566667..7567149 (+) 483 WP_405537668.1 HD domain-containing protein -
  OG787_RS33150 (OG787_33045) - 7567355..7567549 (+) 195 WP_006383514.1 hypothetical protein -
  OG787_RS33165 (OG787_33060) tig 7568095..7569489 (+) 1395 WP_369036221.1 trigger factor -
  OG787_RS33170 (OG787_33065) clpP 7570067..7570684 (+) 618 WP_235480148.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG787_RS33175 (OG787_33070) clpP 7570735..7571433 (+) 699 WP_235479130.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG787_RS33180 (OG787_33075) clpX 7571629..7572915 (+) 1287 WP_235479131.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG787_RS33185 (OG787_33080) - 7573001..7573960 (-) 960 WP_369036222.1 hypothetical protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25597.01 Da        Isoelectric Point: 4.7178

>NTDB_id=657152 OG787_RS33175 WP_235479130.1 7570735..7571433(+) (clpP) [Streptomyces sp. NBC_00075]
MNDFPGSGLYDRTRAAQAAQAQYTGPSAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLC
LESMDPDRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETG
RGQVSDLEIAANEILRMRAQLEDMLARHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNASVR

Nucleotide


Download         Length: 699 bp        

>NTDB_id=657152 OG787_RS33175 WP_235479130.1 7570735..7571433(+) (clpP) [Streptomyces sp. NBC_00075]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGACCGTACGAGGGCGGCACAGGCCGCCCAGGCGCAGTACACCGGCCCCAG
CGCCGAGTCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGC
TCTTCGAGGAGCGCGTGATCTTCCTCGGTGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCACAGCTGCTGTGC
CTGGAGTCGATGGACCCCGACCGGGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCAT
CTACGACACGATGCAGTTCGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTCC
TCGCGGCCGGTACGCCGGGCAAGCGCATGGCACTGCCCAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGC
CGTGGCCAGGTCTCCGACCTGGAGATCGCGGCCAACGAGATCCTCCGGATGCGTGCCCAGCTGGAGGACATGCTGGCCAG
GCACTCCACCACGCCGATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCGT
ACGGCCTGATCGACCAGATCATCTCCACCCGCAAGATGAACAACGCCAGCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(43-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

81.897

0.431
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

81.034

0.405
  clpP Streptococcus mutans UA159

45.729

85.776

0.392
  clpP Streptococcus thermophilus LMD-9

46.667

84.052

0.392
  clpP Streptococcus thermophilus LMG 18311

46.667

84.052

0.392
  clpP Streptococcus pneumoniae D39

44.898

84.483

0.379
  clpP Streptococcus pneumoniae R6

44.898

84.483

0.379
  clpP Streptococcus pneumoniae TIGR4

44.898

84.483

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

84.483

0.379
  clpP Streptococcus pneumoniae Rx1

44.898

84.483

0.379
  clpP Streptococcus pyogenes MGAS315

45.128

84.052

0.379
  clpP Streptococcus pyogenes JRS4

45.128

84.052

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

84.483

0.371