Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MGJ28_RS21520 Genome accession   NZ_CP092387
Coordinates   4088368..4089609 (-) Length   413 a.a.
NCBI ID   WP_016765362.1    Uniprot ID   -
Organism   Priestia megaterium strain BP01R2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4083368..4094609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGJ28_RS21500 (MGJ28_21505) spoVS 4083928..4084188 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  MGJ28_RS21505 (MGJ28_21510) - 4084412..4085209 (-) 798 WP_241096544.1 TIGR00282 family metallophosphoesterase -
  MGJ28_RS21510 (MGJ28_21515) rny 4085291..4086850 (-) 1560 WP_013058803.1 ribonuclease Y -
  MGJ28_RS21515 (MGJ28_21520) recA 4087131..4088168 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  MGJ28_RS21520 (MGJ28_21525) cinA 4088368..4089609 (-) 1242 WP_016765362.1 competence/damage-inducible protein A Machinery gene
  MGJ28_RS21525 (MGJ28_21530) pgsA 4089626..4090210 (-) 585 WP_016765363.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MGJ28_RS21530 (MGJ28_21535) - 4090355..4091338 (-) 984 WP_228459493.1 helix-turn-helix domain-containing protein -
  MGJ28_RS21535 (MGJ28_21540) - 4091351..4092142 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  MGJ28_RS21540 (MGJ28_21545) - 4092356..4092616 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  MGJ28_RS21545 (MGJ28_21550) ymfI 4092682..4093407 (-) 726 WP_241096545.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44853.97 Da        Isoelectric Point: 4.9139

>NTDB_id=657152 MGJ28_RS21520 WP_016765362.1 4088368..4089609(-) (cinA) [Priestia megaterium strain BP01R2]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTSVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=657152 MGJ28_RS21520 WP_016765362.1 4088368..4089609(-) (cinA) [Priestia megaterium strain BP01R2]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGTTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGCTATTCCCCGGGCCTCCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGGGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATCGCACCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACGGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACATCTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATGCAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGACCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.512

99.274

0.591
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus mitis SK321

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

44.634

99.274

0.443