Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MID13_RS12840 Genome accession   NZ_CP092384
Coordinates   2899137..2900366 (+) Length   409 a.a.
NCBI ID   WP_239716630.1    Uniprot ID   -
Organism   Vibrio gigantis strain ACE001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2894137..2905366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS12820 (MID13_12820) ampD 2895196..2895795 (-) 600 WP_239716624.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MID13_RS12825 (MID13_12825) nadC 2895879..2896769 (+) 891 WP_239716626.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MID13_RS12830 (MID13_12830) pilA 2897023..2897430 (+) 408 WP_215404157.1 pilin Machinery gene
  MID13_RS12835 (MID13_12835) pilB 2897436..2899121 (+) 1686 WP_239716628.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MID13_RS12840 (MID13_12840) pilC 2899137..2900366 (+) 1230 WP_239716630.1 type II secretion system F family protein Machinery gene
  MID13_RS12845 (MID13_12845) pilD 2900434..2901303 (+) 870 WP_239716632.1 prepilin peptidase Machinery gene
  MID13_RS12850 (MID13_12850) coaE 2901306..2901920 (+) 615 WP_239716634.1 dephospho-CoA kinase -
  MID13_RS12855 (MID13_12855) zapD 2901947..2902687 (+) 741 WP_239716636.1 cell division protein ZapD -
  MID13_RS12860 (MID13_12860) yacG 2902768..2902965 (+) 198 WP_019823814.1 DNA gyrase inhibitor YacG -
  MID13_RS12865 (MID13_12865) rplS 2903267..2903620 (-) 354 WP_004735514.1 50S ribosomal protein L19 -
  MID13_RS12870 (MID13_12870) trmD 2903680..2904420 (-) 741 WP_086711974.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MID13_RS12875 (MID13_12875) rimM 2904447..2905001 (-) 555 WP_048615624.1 ribosome maturation factor RimM -
  MID13_RS12880 (MID13_12880) rpsP 2905026..2905274 (-) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45281.30 Da        Isoelectric Point: 10.1285

>NTDB_id=657092 MID13_RS12840 WP_239716630.1 2899137..2900366(+) (pilC) [Vibrio gigantis strain ACE001]
MSSKSKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKEQHIQIKKIKKKSISAVTRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQAYSFYTAVGIGLLAL
IIYQLCQRSHSFRLSVSRLGLRFPVLGGVLAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTSGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKIASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=657092 MID13_RS12840 WP_239716630.1 2899137..2900366(+) (pilC) [Vibrio gigantis strain ACE001]
ATGAGTAGCAAGTCCAAACAATCACAATTAAAAAGCTATCACTGGAAAGGTATTAACAGCTCAGGCAAGAAAGTGTCTGG
ACAAACCTTAGCGCTTACCGAATTAGAAGTGCGAGAAAAGCTCAAAGAACAACACATTCAAATTAAAAAAATTAAAAAGA
AAAGTATTTCAGCCGTCACTCGTTTAACACATCGCGTCAAAGCCAAAGACATCACAATTTTAACTCGGCAACTTGCGACT
ATGCTCGCCACAGGTGTACCCATCGTACAAGCGATAAAGTTGGTTTCAGACAATCACCGCAAAGCAGAAATGAAATCAAT
TCTATCGCACATCTGCAAAGGTGTAGAAGCCGGAACACCAATCTCAAAAGCGATGCGAACCGCAAGTCGCCACTTTGATG
ACCTCTACACTGATTTGGTTGCCACAGGTGAGCTTTCTGGTAACCTCGCACAAGTATTTGAACGCTTAGCGACATATCGA
GAAAAGAGTGAGCAATTAAAATCTAAAGTCGTCAAAGCACTGATTTACCCCGCGATGGTGGTCACCGTTGCACTGACCGT
TTCTTATTTAATGCTGACCATGGTCATTCCGGAGTTTGAGTCGATGTTTTCAGGCTTTGGTGCCGATCTCCCTTGGTTTA
CTCAGCAGGTACTCTACCTTTCCCATTGGATGCAGGCTTACAGTTTTTATACGGCTGTAGGCATCGGGCTTCTTGCCCTG
ATTATTTACCAACTGTGTCAGCGCTCCCACTCGTTCAGACTGTCTGTCAGTCGGCTAGGATTGCGTTTCCCTGTTCTCGG
TGGCGTATTAGCGAAAGCCTCAATAGCCAAATTCAGCCGAACCTTATCAACAAGCTTTAGTTCCGGTATTCCCATTTTAA
TGAGCCTAAAAACTACAGCCAAAACCTCAGGCAACCTGCATTATGAATCAGCAATCATTGAGGTTCACCGTGAAACTGCA
GCAGGCATGCCGATGTATATCGCGATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTGCAGATGGTGATGATTGGTGA
AGAGTCGGGCAACCTTGATGATATGCTCAATAAAATCGCTTCCATTTACGAGTTTGAAGTAGACAACACCGTCGACAATT
TAGGCAAGATTTTAGAACCCTTGATCATCGTATTTTTGGGGACGGTTGTTGGCGGGCTTGTGGTTGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.5

97.8

0.778
  pilC Vibrio campbellii strain DS40M4

74.02

99.756

0.738
  pilC Legionella pneumophila strain ERS1305867

42.289

98.289

0.416
  pilC Acinetobacter baylyi ADP1

41.565

100

0.416
  pilC Acinetobacter baumannii D1279779

41.584

98.778

0.411
  pilC Pseudomonas stutzeri DSM 10701

40.909

96.822

0.396
  pilG Neisseria gonorrhoeae MS11

39.348

97.555

0.384
  pilG Neisseria meningitidis 44/76-A

39.098

97.555

0.381