Detailed information NTG0657093

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MID13_RS12845
• Genome accession: NZ_CP092384
• Coordinates: 2900434..2901303 (+)
• Length: 289 a.a.
• NCBI ID: WP_239716632.1
• Uniprot ID: -
• Organism: Vibrio gigantis strain ACE001
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2895434..2906303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MID13_RS12825 (MID13_12825)	nadC	2895879..2896769 (+)	891	WP_239716626.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MID13_RS12830 (MID13_12830)	pilA	2897023..2897430 (+)	408	WP_215404157.1	pilin	Machinery gene
MID13_RS12835 (MID13_12835)	pilB	2897436..2899121 (+)	1686	WP_239716628.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MID13_RS12840 (MID13_12840)	pilC	2899137..2900366 (+)	1230	WP_239716630.1	type II secretion system F family protein	Machinery gene
MID13_RS12845 (MID13_12845)	pilD	2900434..2901303 (+)	870	WP_239716632.1	prepilin peptidase	Machinery gene
MID13_RS12850 (MID13_12850)	coaE	2901306..2901920 (+)	615	WP_239716634.1	dephospho-CoA kinase	-
MID13_RS12855 (MID13_12855)	zapD	2901947..2902687 (+)	741	WP_239716636.1	cell division protein ZapD	-
MID13_RS12860 (MID13_12860)	yacG	2902768..2902965 (+)	198	WP_019823814.1	DNA gyrase inhibitor YacG	-
MID13_RS12865 (MID13_12865)	rplS	2903267..2903620 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
MID13_RS12870 (MID13_12870)	trmD	2903680..2904420 (-)	741	WP_086711974.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
MID13_RS12875 (MID13_12875)	rimM	2904447..2905001 (-)	555	WP_048615624.1	ribosome maturation factor RimM	-
MID13_RS12880 (MID13_12880)	rpsP	2905026..2905274 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32525.71 Da
• Isoelectric Point: 6.9291

>NTDB_id=657093 MID13_RS12845 WP_239716632.1 2900434..2901303(+) (pilD) [Vibrio gigantis strain ACE001]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCETQLRII
DNIPVLSWLFLKGKCHSCASPISARYPLVELLTAILCTVVASHFGFSFYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNVSPVSLQDSVVGAMVGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLLWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=657093 MID13_RS12845 WP_239716632.1 2900434..2901303(+) (pilD) [Vibrio gigantis strain ACE001]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTCCTCAA
TGTAGTCATACACCGCTTACCGATTATGATGGAGCGAGAATGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TCCCAGCACCTGAAGGGAAATTTAACCTAAGCATTCCACGTTCGACTTGCCCGAAATGTGAAACCCAATTAAGAATTATC
GACAATATTCCAGTATTAAGCTGGTTGTTCTTAAAGGGCAAGTGTCACAGTTGTGCGAGTCCAATCAGTGCTCGCTACCC
TTTGGTCGAGCTGCTTACCGCAATCCTTTGTACCGTAGTCGCGAGCCACTTTGGTTTCAGTTTCTACGCTATTGCACTGA
TCTTTTTCACTTTCGCATTGATTACGGCAACCTTTATCGATCTCGACACCATGCTGCTGCCTGATCAAATCACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTAGCACTGTTCAATGTCAGCCCAGTATCGCTGCAAGATTCTGTGGTTGGCGCAATGGT
TGGCTACTTAGCTCTATGGTCTGTTTATTGGCTGTTCAAACTACTAACGGGCAAGGAAGGCATGGGTTACGGTGACTTTA
AACTCTTAGCGGCACTTGGCGCATGGCTTGGTTGGCAGCATCTACCGATGATCATCCTTTTATCTTCGCTTGTTGGCCTT
GTATTTGGTTTGATTCAACTTCGCTTGAAACAACAAGGCATCGATAAAGCCTTTCCATTTGGTCCCTACCTCGCGATTGC
TGGTTGGGTAAGCCTACTGTGGGGCAATGACATTATGGGTTGGTATTTCACTTCTGTATTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.356	100	0.734
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	48.263	89.619	0.433