Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA64_RS16930 Genome accession   NZ_CP108242
Coordinates   3728509..3729117 (-) Length   202 a.a.
NCBI ID   WP_405624001.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00076     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723509..3734117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA64_RS16915 (OHA64_16850) - 3725214..3726227 (+) 1014 WP_405613786.1 hypothetical protein -
  OHA64_RS16920 (OHA64_16855) clpX 3726301..3727587 (-) 1287 WP_356771100.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA64_RS16925 (OHA64_16860) clpP 3727759..3728439 (-) 681 WP_405613788.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA64_RS16930 (OHA64_16865) clpP 3728509..3729117 (-) 609 WP_405624001.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA64_RS16935 (OHA64_16870) tig 3729442..3730854 (-) 1413 WP_405613790.1 trigger factor -
  OHA64_RS16950 (OHA64_16885) - 3731564..3731758 (-) 195 WP_356771106.1 hypothetical protein -
  OHA64_RS16955 (OHA64_16890) - 3732371..3733528 (+) 1158 WP_405613792.1 acyltransferase family protein -
  OHA64_RS16960 (OHA64_16895) - 3733541..3733802 (-) 262 Protein_3364 phosphohydrolase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21319.13 Da        Isoelectric Point: 4.5852

>NTDB_id=657011 OHA64_RS16930 WP_405624001.1 3728509..3729117(-) (clpP) [Streptomyces sp. NBC_00076]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIYDTMQ
FIKNDVMTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTV
EQVTRDSDRDRWFDPEEAKEYGLIDDVISTAAGIPGGGGTGA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=657011 OHA64_RS16930 WP_405624001.1 3728509..3729117(-) (clpP) [Streptomyces sp. NBC_00076]
ATGCCCTCAGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGATGACATCGCAAACAAGATCACCGCGCAGCTGCTGCTCCTTGCCGCGGCCGATC
CCGACAAGGACATCAACCTCTACATCAACAGCCCGGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACGATGCAG
TTCATCAAGAACGACGTGATGACCATCGCGATGGGCCTCGCCGCCTCCATGGGACAGTTCCTGCTCAGCGCGGGCACCCC
CGGCAAGCGCTTCGCGCTGCCGAATGCCGAGATCCTGATCCACCAGCCGTCCGCCGGTCTCGCGGGCTCCGCGTCGGACA
TCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGTCCCAGCACACGGGCCAGACCGTC
GAGCAGGTCACCCGTGACTCGGACCGCGACCGCTGGTTCGACCCCGAGGAGGCCAAGGAGTACGGCCTCATCGACGACGT
CATCAGCACGGCTGCCGGCATCCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.14

85.149

0.495
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.892

91.584

0.475
  clpP Lactococcus lactis subsp. cremoris KW2

52.174

91.089

0.475
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.63

91.089

0.47
  clpP Streptococcus mutans UA159

54.335

85.644

0.465
  clpP Streptococcus pyogenes MGAS315

52.023

85.644

0.446
  clpP Streptococcus pyogenes JRS4

52.023

85.644

0.446
  clpP Streptococcus thermophilus LMG 18311

51.149

86.139

0.441
  clpP Streptococcus thermophilus LMD-9

51.149

86.139

0.441
  clpP Streptococcus pneumoniae Rx1

50.575

86.139

0.436
  clpP Streptococcus pneumoniae D39

50.575

86.139

0.436
  clpP Streptococcus pneumoniae R6

50.575

86.139

0.436
  clpP Streptococcus pneumoniae TIGR4

50.575

86.139

0.436