Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA64_RS16925 Genome accession   NZ_CP108242
Coordinates   3727759..3728439 (-) Length   226 a.a.
NCBI ID   WP_405613788.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00076     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3722759..3733439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA64_RS16915 (OHA64_16850) - 3725214..3726227 (+) 1014 WP_405613786.1 hypothetical protein -
  OHA64_RS16920 (OHA64_16855) clpX 3726301..3727587 (-) 1287 WP_356771100.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA64_RS16925 (OHA64_16860) clpP 3727759..3728439 (-) 681 WP_405613788.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA64_RS16930 (OHA64_16865) clpP 3728509..3729117 (-) 609 WP_405624001.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA64_RS16935 (OHA64_16870) tig 3729442..3730854 (-) 1413 WP_405613790.1 trigger factor -
  OHA64_RS16950 (OHA64_16885) - 3731564..3731758 (-) 195 WP_356771106.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24949.34 Da        Isoelectric Point: 4.6302

>NTDB_id=657010 OHA64_RS16925 WP_405613788.1 3727759..3728439(-) (clpP) [Streptomyces sp. NBC_00076]
MNDFPGSGLYDRSRAEYAGPVAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDLLAKHSTTPIDKIREDIERDKILTADDALAYGLIDQIISTRKMNNASVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=657010 OHA64_RS16925 WP_405613788.1 3727759..3728439(-) (clpP) [Streptomyces sp. NBC_00076]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCTCGCGCGCCGAGTACGCGGGCCCTGTTGCCGAGTCCCGCTATGT
GATCCCCCGTTTCGTCGAGCGCACCTCGCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGTTCCTTCACCGCGCTCACTGCGATTTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCCATCCTGCTGGCCGCCGGTACGCCCG
GTAAGCGCATGGCGCTGCCGAACGCCCGGGTGCTGATCCACCAGCCGTACAGCGAGACGGGCCGGGGCCAGGTCTCCGAC
CTCGAAATCGCCGCGAACGAGATCCTGCGGATGCGTGCCCAGCTGGAAGACCTGCTGGCCAAGCACTCCACCACGCCGAT
CGACAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCTGACGACGCCCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCGTCCGTGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

84.071

0.429
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus mutans UA159

44.776

88.938

0.398
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Streptococcus pneumoniae TIGR4

43.878

86.726

0.381
  clpP Lactococcus lactis subsp. cremoris KW2

43.878

86.726

0.381
  clpP Streptococcus pneumoniae Rx1

43.878

86.726

0.381
  clpP Streptococcus pneumoniae D39

43.878

86.726

0.381
  clpP Streptococcus pneumoniae R6

43.878

86.726

0.381
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.857

86.726

0.372