Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHU34_RS27510 Genome accession   NZ_CP108235
Coordinates   6149227..6149907 (+) Length   226 a.a.
NCBI ID   WP_020127827.1    Uniprot ID   A0A6M4WQU9
Organism   Streptomyces sp. NBC_00080     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6144227..6154907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS27485 (OHU34_27470) - 6145559..6145753 (+) 195 WP_030779494.1 hypothetical protein -
  OHU34_RS27500 (OHU34_27485) tig 6146430..6147803 (+) 1374 WP_142264313.1 trigger factor -
  OHU34_RS27505 (OHU34_27490) clpP 6148239..6148844 (+) 606 WP_028806515.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHU34_RS27510 (OHU34_27495) clpP 6149227..6149907 (+) 681 WP_020127827.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHU34_RS27515 (OHU34_27500) clpX 6150090..6151379 (+) 1290 WP_020127826.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHU34_RS27520 (OHU34_27505) - 6151470..6152462 (-) 993 WP_230195734.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25007.42 Da        Isoelectric Point: 4.5652

>NTDB_id=656865 OHU34_RS27510 WP_020127827.1 6149227..6149907(+) (clpP) [Streptomyces sp. NBC_00080]
MNDFPGSGIYARTEAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKLNNNSLV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=656865 OHU34_RS27510 WP_020127827.1 6149227..6149907(+) (clpP) [Streptomyces sp. NBC_00080]
GTGAACGACTTCCCCGGCAGCGGCATCTACGCCCGCACCGAGGCCGAATACACCGGCCCTCGCGCCGAATCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGCGACATCTCGGTCTACATCAACAGCCCGGGCGGCTCCTTCACGGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGTCAGGCGGCGTCCGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACGGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGCGCGCAGCTGGAGGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGCAAGCTGAACAACAACTCGCTCGTTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4WQU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Lactococcus lactis subsp. cremoris KW2

45.274

88.938

0.403
  clpP Streptococcus mutans UA159

45.729

88.053

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.279

88.938

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389