Detailed information NTG0656866

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHU34_RS27515
• Genome accession: NZ_CP108235
• Coordinates: 6150090..6151379 (+)
• Length: 429 a.a.
• NCBI ID: WP_020127826.1
• Uniprot ID: A0A6M4WMS1
• Organism: Streptomyces sp. NBC_00080
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6145090..6156379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHU34_RS27485 (OHU34_27470)	-	6145559..6145753 (+)	195	WP_030779494.1	hypothetical protein	-
OHU34_RS27500 (OHU34_27485)	tig	6146430..6147803 (+)	1374	WP_142264313.1	trigger factor	-
OHU34_RS27505 (OHU34_27490)	clpP	6148239..6148844 (+)	606	WP_028806515.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU34_RS27510 (OHU34_27495)	clpP	6149227..6149907 (+)	681	WP_020127827.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU34_RS27515 (OHU34_27500)	clpX	6150090..6151379 (+)	1290	WP_020127826.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHU34_RS27520 (OHU34_27505)	-	6151470..6152462 (-)	993	WP_230195734.1	hypothetical protein	-
OHU34_RS27525 (OHU34_27510)	-	6152599..6155223 (+)	2625	WP_142264311.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 46908.76 Da
• Isoelectric Point: 4.7788

>NTDB_id=656866 OHU34_RS27515 WP_020127826.1 6150090..6151379(+) (clpX) [Streptomyces sp. NBC_00080]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIETRAGAKGIGFGATIRSKRELESKDQFEAVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQAVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARGGRGPGEQKTA

Nucleotide

• Length: 1290 bp

>NTDB_id=656866 OHU34_RS27515 WP_020127826.1 6150090..6151379(+) (clpX) [Streptomyces sp. NBC_00080]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAGCTCGCGGAAACGA
GCGAGGTCCGCTGGGAGGAACTCCCGAAGCCGCGCGAGATCTACGAGTTCCTCGAGGGCTACGTGGTGGGCCAGGAGCCC
GCCAAGAAGGCCCTGTCGGTAGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACGGCGGCGGCCAAAGCCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTCGGCCCCACCGGCTCGGGCAAGACGCTCCTGGCACAGA
CCCTGGCGCGCATGCTGAACGTCCCGTTCGCGATCGCCGACGCCACGGCGCTGACCGAGGCGGGCTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCGGACTACGACGTCAAGAAGGCCGAGACCGGCATCATCTACATCGA
TGAGATCGACAAGGTCGCGCGCAAGAGCGAGAACCCCTCCATCACCCGTGACGTGTCGGGCGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCGGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCTCGGGCCTGGAGAAGATCATCGAGACCCGGGCCGGCGC
CAAGGGCATCGGGTTCGGCGCGACGATCCGCTCCAAGCGCGAGCTGGAGTCCAAGGACCAGTTCGAGGCCGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCGGAGTTCATCGGCCGTCTCCCGGTCATCACCTCGGTCCACAACCTGGACCGC
GAGGCGCTCCTCCAGATCCTGATCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGGCTCTTCGAACTCGACGGTGT
GGAGCTGGACTTCGAGCGGGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCCCGCGGCCTGC
GCGCGATCATGGAGGAAGTCCTCCAGGCGGTCATGTACGAGGTCCCCTCCCGCAAGGACGTGGCCCGCGTGGTCATCACG
GCGGACGTGGTCCTCTCCAACGTCAACCCGACCCTGATCCCGCGCGACGCCCGCGGCGGCCGCGGCCCGGGCGAGCAGAA
GACCGCCTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

3D structure

• AlphaFold DB: A0A6M4WMS1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.687	93.706	0.587
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.501	95.804	0.522