Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG904_RS20165 Genome accession   NZ_CP108221
Coordinates   4593141..4593758 (+) Length   205 a.a.
NCBI ID   WP_405492893.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00096     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 4588141..4598758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG904_RS20135 (OG904_20125) - 4588511..4589953 (+) 1443 WP_405492885.1 pyridoxal phosphate-dependent decarboxylase family protein -
  OG904_RS20140 (OG904_20130) - 4589950..4590405 (+) 456 WP_405492887.1 HD domain-containing protein -
  OG904_RS20145 (OG904_20135) - 4590536..4590730 (+) 195 WP_405492889.1 hypothetical protein -
  OG904_RS20160 (OG904_20150) tig 4591440..4592843 (+) 1404 WP_405492891.1 trigger factor -
  OG904_RS20165 (OG904_20155) clpP 4593141..4593758 (+) 618 WP_405492893.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG904_RS20170 (OG904_20160) clpP 4593845..4594516 (+) 672 WP_328298620.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG904_RS20175 (OG904_20165) clpX 4594670..4595956 (+) 1287 WP_405492895.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG904_RS20180 (OG904_20170) - 4596632..4597603 (-) 972 WP_405492897.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21617.53 Da        Isoelectric Point: 4.7797

>NTDB_id=656612 OG904_RS20165 WP_405492893.1 4593141..4593758(+) (clpP) [Streptomyces sp. NBC_00096]
MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPDKDIYLYINSPGGSVTAGMAVYD
TMQFIPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGIGGTASDIKIQAQYLLRTKQRMAEITAHHSG
QTVETIIRDGDRDRWYTAEEAKAYGLIDEIISAASLAPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=656612 OG904_RS20165 WP_405492893.1 4593141..4593758(+) (clpP) [Streptomyces sp. NBC_00096]
GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CGGCGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCGAACAAGATCACGGCGCAGCTCCTTCTCCTGG
CCGCCGAGCCGGACAAGGACATCTACCTGTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGGTCTACGAC
ACCATGCAGTTCATCCCGAACGACGTCGTCACCATCGGTATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGG
CGGCACCGCGGGCAAGCGCTTCGCGCTCCCGAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGTGGCACCG
CCTCGGACATCAAGATCCAGGCCCAGTACCTGCTGCGCACGAAGCAGCGCATGGCTGAGATCACCGCCCACCACTCCGGC
CAGACCGTGGAGACGATCATCCGCGACGGCGACCGCGACCGCTGGTACACGGCGGAAGAGGCCAAGGCTTACGGCCTCAT
CGACGAGATCATCTCCGCCGCGTCCCTGGCCCCCGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

50.794

92.195

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.526

92.683

0.468
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

92.195

0.463
  clpP Bacillus subtilis subsp. subtilis str. 168

55.233

83.902

0.463
  clpP Streptococcus pyogenes MGAS315

51.124

86.829

0.444
  clpP Streptococcus mutans UA159

51.124

86.829

0.444
  clpP Streptococcus pyogenes JRS4

51.124

86.829

0.444
  clpP Streptococcus pneumoniae TIGR4

50

86.829

0.434
  clpP Streptococcus thermophilus LMG 18311

50

86.829

0.434
  clpP Streptococcus thermophilus LMD-9

50

86.829

0.434
  clpP Streptococcus pneumoniae Rx1

50

86.829

0.434
  clpP Streptococcus pneumoniae D39

50

86.829

0.434
  clpP Streptococcus pneumoniae R6

50

86.829

0.434