Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG904_RS20170 Genome accession   NZ_CP108221
Coordinates   4593845..4594516 (+) Length   223 a.a.
NCBI ID   WP_328298620.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00096     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4588845..4599516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG904_RS20140 (OG904_20130) - 4589950..4590405 (+) 456 WP_405492887.1 HD domain-containing protein -
  OG904_RS20145 (OG904_20135) - 4590536..4590730 (+) 195 WP_405492889.1 hypothetical protein -
  OG904_RS20160 (OG904_20150) tig 4591440..4592843 (+) 1404 WP_405492891.1 trigger factor -
  OG904_RS20165 (OG904_20155) clpP 4593141..4593758 (+) 618 WP_405492893.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG904_RS20170 (OG904_20160) clpP 4593845..4594516 (+) 672 WP_328298620.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG904_RS20175 (OG904_20165) clpX 4594670..4595956 (+) 1287 WP_405492895.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG904_RS20180 (OG904_20170) - 4596632..4597603 (-) 972 WP_405492897.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24465.89 Da        Isoelectric Point: 4.6524

>NTDB_id=656613 OG904_RS20170 WP_328298620.1 4593845..4594516(+) (clpP) [Streptomyces sp. NBC_00096]
MVNTQMHMNNLSPASGLYTGAPVDNRYVVPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMD
PDRDIYLYINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGAPGKRMALPNARVLIHQPSGGTGREQLS
DLEIAANEILRMRDQLENMLALHSSTPIEKIRDDIERDKILTAQDALAYGLIDQVVATRKTSN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=656613 OG904_RS20170 WP_328298620.1 4593845..4594516(+) (clpP) [Streptomyces sp. NBC_00096]
ATGGTGAACACCCAGATGCACATGAACAACCTTTCTCCCGCGAGCGGCCTCTACACCGGCGCGCCGGTGGACAACCGTTA
CGTCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTCCGCGAGTACGACCCGTACGCCAAGCTGTTCGAGGAGCGCA
TCATCTTCCTCGGCGTGCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTACCTGTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCTCGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGCGCCC
CCGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCCTCCGGTGGCACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCGACCAGCTGGAGAACATGCTGGCCCTGCACTCCTCGACGCC
GATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCCAGGACGCGCTGGCGTACGGCCTGATCGACC
AGGTCGTCGCCACCCGCAAGACTTCGAACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.91

84.753

0.448
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.128

84.305

0.439
  clpP Streptococcus pneumoniae D39

47.644

85.65

0.408
  clpP Streptococcus pneumoniae R6

47.644

85.65

0.408
  clpP Streptococcus pneumoniae TIGR4

47.644

85.65

0.408
  clpP Streptococcus pneumoniae Rx1

47.644

85.65

0.408
  clpP Streptococcus thermophilus LMD-9

46.392

86.996

0.404
  clpP Streptococcus thermophilus LMG 18311

46.392

86.996

0.404
  clpP Streptococcus mutans UA159

47.368

85.202

0.404
  clpP Streptococcus pyogenes JRS4

46.316

85.202

0.395
  clpP Streptococcus pyogenes MGAS315

46.316

85.202

0.395
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

85.65

0.395
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

85.65

0.386