Detailed information NTG0656614

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG904_RS20175
• Genome accession: NZ_CP108221
• Coordinates: 4594670..4595956 (+)
• Length: 428 a.a.
• NCBI ID: WP_405492895.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00096
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4589670..4600956

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG904_RS20140 (OG904_20130)	-	4589950..4590405 (+)	456	WP_405492887.1	HD domain-containing protein	-
OG904_RS20145 (OG904_20135)	-	4590536..4590730 (+)	195	WP_405492889.1	hypothetical protein	-
OG904_RS20160 (OG904_20150)	tig	4591440..4592843 (+)	1404	WP_405492891.1	trigger factor	-
OG904_RS20165 (OG904_20155)	clpP	4593141..4593758 (+)	618	WP_405492893.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG904_RS20170 (OG904_20160)	clpP	4593845..4594516 (+)	672	WP_328298620.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG904_RS20175 (OG904_20165)	clpX	4594670..4595956 (+)	1287	WP_405492895.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG904_RS20180 (OG904_20170)	-	4596632..4597603 (-)	972	WP_405492897.1	hypothetical protein	-
OG904_RS20185 (OG904_20175)	-	4597731..4600376 (+)	2646	WP_405492899.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46978.87 Da
• Isoelectric Point: 4.8219

>NTDB_id=656614 OG904_RS20175 WP_405492895.1 4594670..4595956(+) (clpX) [Streptomyces sp. NBC_00096]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKVLSVAVYNHYKRVQAGENGGGTGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLERIIESRAGAKGIGFGATIRSKREIEASNQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVRSNVNPTLVPRIVPKDQGPHEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=656614 OG904_RS20175 WP_405492895.1 4594670..4595956(+) (clpX) [Streptomyces sp. NBC_00096]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAGCTCGCGGAGACCT
CCGAGGTCCGCTGGGAAGAACTTCCCAAGCCCCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGTGCTCTCCGTCGCTGTGTACAACCATTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGGGACGGGCCG
GGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCGGGCAAGACCCTGCTGGCCCAGA
CGCTCGCCCGCATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTGAGCGGCGAGGGCGTGCAGCAGGCCC
TCCTGAAGATCCTGGAAGGCACCACCGCTTCCGTGCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCTCCGGCCTGGAGCGGATCATCGAGTCCCGCGCCGGCGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGCAACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTGCCCGTCATCACCTCCGTGCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTGATCGAGCCGCGCAACGCCCTGGTCAAGCAGTACCAGCGGCTGTTCGAACTCGACGGCGT
CGAGCTGGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCGATCCTCCGCCAGACGGGCGCGCGGGGCTTGC
GCGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
TCGGACGTGGTCCGCTCCAACGTCAACCCGACGCTGGTCCCGCGGATCGTCCCGAAGGACCAGGGCCCGCACGAGAAGTC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.433	93.925	0.596
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521