Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MIH19_RS04880 Genome accession   NZ_CP092289
Coordinates   1023108..1024325 (-) Length   405 a.a.
NCBI ID   WP_249007805.1    Uniprot ID   -
Organism   Marinobacter sp. M1C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1018108..1029325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIH19_RS04850 (MIH19_04850) - 1018678..1019238 (-) 561 WP_249007799.1 YfaZ family outer membrane protein -
  MIH19_RS04855 (MIH19_04855) yacG 1019448..1019645 (-) 198 WP_249007800.1 DNA gyrase inhibitor YacG -
  MIH19_RS04860 (MIH19_04860) tsaA 1019722..1020477 (-) 756 WP_249007801.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  MIH19_RS04865 (MIH19_04865) - 1020483..1021592 (-) 1110 WP_249007802.1 hypothetical protein -
  MIH19_RS04870 (MIH19_04870) coaE 1021564..1022172 (-) 609 WP_249007803.1 dephospho-CoA kinase -
  MIH19_RS04875 (MIH19_04875) pilD 1022229..1023104 (-) 876 WP_249007804.1 A24 family peptidase Machinery gene
  MIH19_RS04880 (MIH19_04880) pilC 1023108..1024325 (-) 1218 WP_249007805.1 type II secretion system F family protein Machinery gene
  MIH19_RS04885 (MIH19_04885) pilB 1024328..1026043 (-) 1716 WP_249007806.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MIH19_RS04890 (MIH19_04890) tviB 1026287..1027549 (+) 1263 WP_249007807.1 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB -
  MIH19_RS04895 (MIH19_04895) - 1027876..1028982 (+) 1107 WP_249007808.1 UDP-N-acetylglucosamine 2-epimerase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44496.65 Da        Isoelectric Point: 9.9083

>NTDB_id=656564 MIH19_RS04880 WP_249007805.1 1023108..1024325(-) (pilC) [Marinobacter sp. M1C]
MAQKAKKLESYVWEGKDRRGNKAKGEMPGVSLALAKAQLRKQGIVPDKVKKKSKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENRGLQELVMSVRNDIASGNSFAGSLRKHPRQFDDLYCNLVDSGEKAGALEKMLDRIATYMEKT
EILKKKVKKAMTYPIAVVVVAIIVTAILLVKVVPQFEALFNGFGAELPVFTQMVVRLSEWMQTWWFVVMLGIIGAIVLFK
ESKRRSQKFSDIVDKYILKVPIMGEILDKSAVAKFGRVLSTTFAAGVPLVDALESVAGATGNAVYRDAVMRIRNDVSSGT
QLQASMRAQNVFPVMAVQLTAIGEESGNLDEMLEKVAEHYEAVVDDMVDNLTALMEPMIMVVLGILVGGLIIAMYLPIFQ
MGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=656564 MIH19_RS04880 WP_249007805.1 1023108..1024325(-) (pilC) [Marinobacter sp. M1C]
ATGGCTCAGAAAGCGAAGAAACTGGAATCTTACGTTTGGGAAGGCAAAGATCGCCGAGGCAACAAAGCCAAGGGTGAAAT
GCCTGGCGTTAGCTTGGCTTTGGCCAAGGCCCAGTTGCGCAAGCAGGGCATAGTTCCAGACAAGGTGAAAAAGAAATCCA
AACCCTTGTTCGGCGGCAGCAAAAAAATTACGCCTTTTGACATTGCCATGCTCACCCGACAACTGGCCACCATGATGAAA
GCCGGTGTGCCCCTGGTGCAAAGCTTTGATATCGTGGCCGATGGCCTGGAAAACAGAGGCCTACAGGAACTGGTGATGTC
GGTTCGGAACGACATTGCCTCTGGTAACAGTTTCGCCGGATCGTTGCGTAAACACCCCCGTCAATTTGACGACCTGTACT
GCAACTTGGTGGATTCCGGCGAAAAAGCCGGTGCGCTCGAGAAGATGCTCGACCGTATTGCCACCTACATGGAAAAAACA
GAAATTCTGAAGAAAAAAGTCAAAAAAGCGATGACCTATCCTATCGCCGTTGTAGTGGTCGCTATTATTGTCACCGCAAT
TCTGCTCGTGAAAGTAGTGCCACAATTTGAAGCACTATTTAACGGGTTCGGTGCAGAGCTTCCGGTTTTTACTCAGATGG
TGGTGCGCCTGTCGGAATGGATGCAGACTTGGTGGTTCGTGGTGATGCTGGGAATTATCGGTGCCATTGTTTTATTCAAA
GAGTCGAAACGGCGGTCACAGAAATTCTCGGACATTGTTGATAAGTACATTTTAAAAGTACCCATTATGGGTGAAATCTT
GGACAAATCTGCGGTTGCCAAGTTTGGCCGGGTGTTGTCAACAACCTTTGCAGCCGGCGTTCCCCTTGTAGACGCCCTTG
AATCCGTAGCCGGTGCTACCGGCAATGCGGTATATCGCGATGCCGTTATGCGTATCCGCAATGACGTGTCCAGCGGCACC
CAACTGCAAGCCTCTATGCGGGCGCAGAACGTGTTTCCGGTGATGGCGGTTCAGCTAACAGCCATTGGCGAGGAATCTGG
TAACCTGGACGAAATGCTGGAAAAAGTGGCCGAGCACTACGAAGCAGTAGTGGATGACATGGTCGACAACCTGACTGCGC
TGATGGAGCCGATGATTATGGTTGTACTGGGCATTCTGGTGGGCGGCCTGATTATCGCCATGTATCTACCGATCTTCCAA
ATGGGCCAGGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

67.16

100

0.672
  pilC Acinetobacter baylyi ADP1

57.882

100

0.58
  pilC Acinetobacter baumannii D1279779

57.778

100

0.578
  pilC Legionella pneumophila strain ERS1305867

52.956

100

0.531
  pilG Neisseria gonorrhoeae MS11

43.704

100

0.437
  pilG Neisseria meningitidis 44/76-A

43.21

100

0.432
  pilC Vibrio cholerae strain A1552

40

100

0.4
  pilC Vibrio campbellii strain DS40M4

39.655

100

0.398