Detailed information NTG0656563

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MIH19_RS04875
• Genome accession: NZ_CP092289
• Coordinates: 1022229..1023104 (-)
• Length: 291 a.a.
• NCBI ID: WP_249007804.1
• Uniprot ID: -
• Organism: Marinobacter sp. M1C
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1017229..1028104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MIH19_RS04845 (MIH19_04845)	-	1017610..1018539 (-)	930	WP_249007798.1	glucosaminidase domain-containing protein	-
MIH19_RS04850 (MIH19_04850)	-	1018678..1019238 (-)	561	WP_249007799.1	YfaZ family outer membrane protein	-
MIH19_RS04855 (MIH19_04855)	yacG	1019448..1019645 (-)	198	WP_249007800.1	DNA gyrase inhibitor YacG	-
MIH19_RS04860 (MIH19_04860)	tsaA	1019722..1020477 (-)	756	WP_249007801.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
MIH19_RS04865 (MIH19_04865)	-	1020483..1021592 (-)	1110	WP_249007802.1	hypothetical protein	-
MIH19_RS04870 (MIH19_04870)	coaE	1021564..1022172 (-)	609	WP_249007803.1	dephospho-CoA kinase	-
MIH19_RS04875 (MIH19_04875)	pilD	1022229..1023104 (-)	876	WP_249007804.1	A24 family peptidase	Machinery gene
MIH19_RS04880 (MIH19_04880)	pilC	1023108..1024325 (-)	1218	WP_249007805.1	type II secretion system F family protein	Machinery gene
MIH19_RS04885 (MIH19_04885)	pilB	1024328..1026043 (-)	1716	WP_249007806.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MIH19_RS04890 (MIH19_04890)	tviB	1026287..1027549 (+)	1263	WP_249007807.1	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32046.30 Da
• Isoelectric Point: 6.4315

>NTDB_id=656563 MIH19_RS04875 WP_249007804.1 1022229..1023104(-) (pilD) [Marinobacter sp. M1C]
MMSFSIFLDTPWLLYSTVAFLSLCIGSFLNVVVFRLPAMMQQEWRCQCEELLEVPEAKREPATVLSLSKPASTCPHCGHG
IRAWQNVPVISYLLLKGKCARCSKPISARYPIIELATAVFSVLTVYLLGPTPAALWALLLVWALVALTMIDFDTQLLPDS
ITLPLLWLGLIVNYFGQLVPFNEAFWGAVVGYLALWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWTLLPAVILLSSV
VGAAVGIALMVFKQQGREVPIPFGPYLATAGLMCLWFGDEIVGVWFGFIGV

Nucleotide

• Length: 876 bp

>NTDB_id=656563 MIH19_RS04875 WP_249007804.1 1022229..1023104(-) (pilD) [Marinobacter sp. M1C]
ATGATGAGTTTTAGCATCTTTTTGGACACACCCTGGCTGCTGTACAGCACGGTTGCTTTTCTATCTTTGTGCATTGGCAG
TTTTCTGAACGTGGTTGTTTTTCGCCTGCCGGCAATGATGCAGCAGGAGTGGCGCTGCCAATGTGAAGAGCTGCTGGAAG
TGCCAGAGGCCAAGCGGGAACCGGCGACGGTGCTAAGCCTGTCAAAGCCAGCCTCTACCTGCCCCCACTGCGGCCACGGC
ATTCGCGCCTGGCAGAATGTACCGGTTATCAGCTACTTGCTGTTGAAAGGCAAGTGCGCCCGTTGCAGCAAACCGATTTC
AGCGCGCTACCCAATTATCGAGTTAGCGACAGCGGTGTTCTCGGTACTTACCGTGTACCTGCTGGGGCCAACGCCTGCGG
CGCTTTGGGCGTTATTGCTGGTGTGGGCGCTGGTGGCGCTGACGATGATTGATTTTGATACTCAACTGTTGCCAGACTCC
ATTACTCTGCCCCTGCTTTGGTTAGGGCTGATTGTGAATTACTTTGGCCAACTGGTGCCTTTTAATGAGGCATTCTGGGG
CGCCGTAGTCGGTTACCTGGCACTCTGGTCGGTTTACTGGCTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTACG
GCGATTTCAAGCTGCTGGCAGCGTTAGGCGCGTGGCTGGGTTGGACGTTATTGCCAGCGGTTATTCTGTTATCCTCTGTT
GTAGGCGCAGCCGTTGGTATAGCCTTGATGGTGTTCAAACAGCAGGGCCGAGAGGTGCCCATTCCATTTGGGCCTTATTT
GGCCACGGCTGGCTTGATGTGTTTGTGGTTTGGTGATGAAATTGTGGGTGTGTGGTTCGGTTTTATTGGTGTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	53.025	96.564	0.512
pilD	Acinetobacter nosocomialis M2	53.025	96.564	0.512
pilD	Vibrio campbellii strain DS40M4	51.056	97.595	0.498
pilD	Vibrio cholerae strain A1552	50.35	98.282	0.495
pilD	Neisseria gonorrhoeae MS11	49.43	90.378	0.447