Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MIH18_RS07725 Genome accession   NZ_CP092284
Coordinates   1674155..1675372 (+) Length   405 a.a.
NCBI ID   WP_249014254.1    Uniprot ID   -
Organism   Marinobacter sp. M3C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1669155..1680372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIH18_RS07705 (MIH18_07700) - 1669329..1669673 (+) 345 WP_283164888.1 hypothetical protein -
  MIH18_RS07710 (MIH18_07705) - 1669737..1670816 (-) 1080 WP_249014251.1 glycosyltransferase family 4 protein -
  MIH18_RS07715 (MIH18_07710) tviB 1670932..1672194 (-) 1263 WP_249014252.1 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB -
  MIH18_RS07720 (MIH18_07715) pilB 1672437..1674152 (+) 1716 WP_249014253.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MIH18_RS07725 (MIH18_07720) pilC 1674155..1675372 (+) 1218 WP_249014254.1 type II secretion system F family protein Machinery gene
  MIH18_RS07730 (MIH18_07725) pilD 1675376..1676251 (+) 876 WP_249014255.1 A24 family peptidase Machinery gene
  MIH18_RS07735 (MIH18_07730) coaE 1676308..1676916 (+) 609 WP_249007803.1 dephospho-CoA kinase -
  MIH18_RS07740 (MIH18_07735) - 1676888..1677997 (+) 1110 WP_249014256.1 hypothetical protein -
  MIH18_RS07745 (MIH18_07740) tsaA 1678003..1678758 (+) 756 WP_249014257.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  MIH18_RS07750 (MIH18_07745) yacG 1678835..1679032 (+) 198 WP_249007800.1 DNA gyrase inhibitor YacG -
  MIH18_RS07755 (MIH18_07750) - 1679241..1679801 (+) 561 WP_249014258.1 YfaZ family outer membrane protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44510.68 Da        Isoelectric Point: 9.8237

>NTDB_id=656503 MIH18_RS07725 WP_249014254.1 1674155..1675372(+) (pilC) [Marinobacter sp. M3C]
MAQKAKKLESYVWEGKDRRGNKAKGEMPGVSLALAKAQLRKQGIVPDKVKKKSKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENRGLQELVMSVRNDIASGNSFAGSLRKHPRQFDDLYCNLVDSGEKAGALEKMLDRIATYMEKT
EILKKKVKKAMTYPIAVVVVAIIVTAILLVKVVPQFEQLFNGFGAELPVFTQMVVRLSEWMQTWWFVVMLGIIGAIVLFK
ESKLRSQKFSDIVDKYILKVPIMGEILDKSAVAKFGRVLSTTFAAGVPLVDALESVAGATGNAVYRDAVMRIRNDVSSGT
QLQASMRAQNVFPVMAVQLTAIGEESGNLDEMLEKVAEHYEAVVDDMVDNLTALMEPMIMVVLGILVGGLIIAMYLPIFQ
MGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=656503 MIH18_RS07725 WP_249014254.1 1674155..1675372(+) (pilC) [Marinobacter sp. M3C]
ATGGCTCAGAAAGCGAAGAAACTGGAATCTTACGTTTGGGAAGGCAAAGATCGCCGGGGCAACAAAGCCAAGGGTGAAAT
GCCTGGCGTTAGCCTGGCTTTGGCCAAGGCCCAGTTGCGCAAGCAGGGCATAGTTCCAGACAAGGTGAAAAAGAAATCCA
AACCCTTGTTCGGCGGCAGCAAAAAAATTACGCCTTTTGACATTGCCATGCTCACCCGACAACTGGCCACCATGATGAAA
GCCGGTGTGCCCCTGGTGCAAAGCTTTGATATCGTGGCCGATGGCCTGGAAAACAGAGGCCTACAGGAACTGGTGATGTC
GGTTCGGAATGACATTGCCTCTGGTAACAGTTTCGCCGGATCGTTGCGTAAACACCCCCGTCAATTTGACGACCTGTACT
GCAACTTGGTGGATTCCGGCGAAAAAGCCGGTGCGCTCGAGAAGATGCTCGACCGTATTGCCACCTACATGGAAAAAACA
GAAATTCTGAAGAAAAAAGTCAAAAAAGCGATGACCTATCCTATCGCCGTTGTAGTGGTCGCTATTATTGTCACCGCAAT
TCTGCTCGTAAAAGTAGTTCCGCAGTTTGAACAACTTTTCAACGGGTTTGGTGCAGAGCTGCCGGTGTTCACTCAAATGG
TGGTGCGCCTGTCGGAATGGATGCAGACTTGGTGGTTCGTGGTGATGCTGGGAATTATCGGTGCCATTGTTTTATTCAAA
GAGTCGAAACTGCGGTCACAGAAATTCTCGGACATTGTTGATAAGTACATTTTAAAAGTACCCATTATGGGTGAAATCTT
GGACAAATCTGCGGTTGCCAAGTTTGGCCGGGTGTTATCAACAACCTTTGCAGCCGGTGTTCCCCTTGTAGACGCCCTTG
AATCCGTTGCGGGCGCTACGGGCAATGCGGTATATCGCGATGCCGTTATGCGTATCCGCAATGACGTGTCCAGCGGTACC
CAACTGCAAGCCTCTATGCGGGCGCAGAACGTGTTTCCGGTGATGGCGGTTCAGCTAACAGCCATTGGCGAGGAATCTGG
TAACCTGGACGAAATGCTGGAAAAAGTGGCCGAGCACTACGAAGCAGTAGTGGATGACATGGTCGACAACCTGACTGCGC
TGATGGAGCCGATGATTATGGTTGTACTGGGCATTCTGGTGGGCGGCCTGATTATCGCCATGTATCTACCGATCTTCCAA
ATGGGCCAGGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

67.16

100

0.672
  pilC Acinetobacter baylyi ADP1

57.882

100

0.58
  pilC Acinetobacter baumannii D1279779

57.778

100

0.578
  pilC Legionella pneumophila strain ERS1305867

52.956

100

0.531
  pilG Neisseria gonorrhoeae MS11

43.704

100

0.437
  pilG Neisseria meningitidis 44/76-A

43.21

100

0.432
  pilC Vibrio cholerae strain A1552

40

100

0.4
  pilC Vibrio campbellii strain DS40M4

39.655

100

0.398