Detailed information NTG0656504

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MIH18_RS07730
• Genome accession: NZ_CP092284
• Coordinates: 1675376..1676251 (+)
• Length: 291 a.a.
• NCBI ID: WP_249014255.1
• Uniprot ID: -
• Organism: Marinobacter sp. M3C
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1670376..1681251

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MIH18_RS07715 (MIH18_07710)	tviB	1670932..1672194 (-)	1263	WP_249014252.1	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	-
MIH18_RS07720 (MIH18_07715)	pilB	1672437..1674152 (+)	1716	WP_249014253.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MIH18_RS07725 (MIH18_07720)	pilC	1674155..1675372 (+)	1218	WP_249014254.1	type II secretion system F family protein	Machinery gene
MIH18_RS07730 (MIH18_07725)	pilD	1675376..1676251 (+)	876	WP_249014255.1	A24 family peptidase	Machinery gene
MIH18_RS07735 (MIH18_07730)	coaE	1676308..1676916 (+)	609	WP_249007803.1	dephospho-CoA kinase	-
MIH18_RS07740 (MIH18_07735)	-	1676888..1677997 (+)	1110	WP_249014256.1	hypothetical protein	-
MIH18_RS07745 (MIH18_07740)	tsaA	1678003..1678758 (+)	756	WP_249014257.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
MIH18_RS07750 (MIH18_07745)	yacG	1678835..1679032 (+)	198	WP_249007800.1	DNA gyrase inhibitor YacG	-
MIH18_RS07755 (MIH18_07750)	-	1679241..1679801 (+)	561	WP_249014258.1	YfaZ family outer membrane protein	-
MIH18_RS07760 (MIH18_07755)	-	1679940..1680869 (+)	930	WP_249014259.1	glucosaminidase domain-containing protein	-
MIH18_RS07765 (MIH18_07760)	-	1680941..1681201 (+)	261	WP_249014260.1	hypothetical protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32132.39 Da
• Isoelectric Point: 5.7631

>NTDB_id=656504 MIH18_RS07730 WP_249014255.1 1675376..1676251(+) (pilD) [Marinobacter sp. M3C]
MMSFSIFLDTPWLLYSTVAFLSLCIGSFLNVVIFRLPAMMQQEWRCQCEELLEVPEAKREPAKVLSLSKPASTCPHCGHG
IRAWQNIPVISYLLLKGKCARCSEPISARYPIIELATAVFSVLTVYLLGPTPAALWALLLVWALVALTMIDFDTQLLPDS
ITLPLLWLGLIVNYFGQLVPFNEAFWGAVVGYLALWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWTLLPAVILLSSV
VGAAVGIALMVFKQQGREVPIPFGPYLATAGLMCLWFGDEIVGVWFGFLSV

Nucleotide

• Length: 876 bp

>NTDB_id=656504 MIH18_RS07730 WP_249014255.1 1675376..1676251(+) (pilD) [Marinobacter sp. M3C]
ATGATGAGTTTTAGCATCTTTTTGGACACACCCTGGCTGCTGTACAGCACGGTTGCTTTTCTATCTTTGTGCATTGGCAG
TTTTCTGAACGTGGTTATTTTTCGCCTGCCGGCAATGATGCAGCAGGAGTGGCGCTGCCAATGTGAAGAGCTGCTGGAAG
TGCCAGAGGCCAAGCGGGAGCCGGCGAAGGTGCTAAGCCTGTCAAAGCCAGCCTCTACCTGCCCCCACTGCGGCCACGGC
ATTCGCGCCTGGCAGAATATACCGGTCATTAGTTACCTGCTGTTGAAAGGCAAGTGCGCCCGTTGCAGCGAACCGATTTC
AGCGCGCTACCCGATTATCGAGTTAGCGACAGCGGTGTTCTCGGTGCTCACCGTGTATCTTCTGGGGCCAACGCCTGCGG
CGCTTTGGGCGCTATTGTTGGTGTGGGCGCTGGTGGCGCTGACGATGATTGATTTTGATACTCAACTGCTGCCAGACTCC
ATCACTCTGCCCCTGCTTTGGTTAGGGCTGATTGTGAATTACTTTGGCCAACTGGTGCCTTTTAATGAGGCATTCTGGGG
CGCCGTAGTCGGTTACCTGGCACTCTGGTCGGTTTACTGGCTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTACG
GCGATTTCAAGCTGCTGGCAGCGTTAGGCGCGTGGCTGGGTTGGACGTTATTGCCAGCGGTTATTCTGTTATCCTCTGTT
GTAGGCGCAGCCGTTGGTATAGCCTTGATGGTGTTCAAACAGCAGGGCCGAGAGGTGCCCATTCCATTTGGGCCTTATTT
GGCCACGGCTGGCTTGATGTGTTTGTGGTTTGGTGATGAAATTGTGGGTGTGTGGTTCGGTTTTCTTAGTGTATAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	53.737	96.564	0.519
pilD	Acinetobacter nosocomialis M2	53.737	96.564	0.519
pilD	Vibrio campbellii strain DS40M4	52.113	97.595	0.509
pilD	Vibrio cholerae strain A1552	51.049	98.282	0.502
pilD	Neisseria gonorrhoeae MS11	49.81	90.378	0.45