Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LPY66_RS20815 Genome accession   NZ_CP092282
Coordinates   4481602..4482006 (-) Length   134 a.a.
NCBI ID   WP_337986142.1    Uniprot ID   -
Organism   Dehalobacter sp. DCM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4476602..4487006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY66_RS20790 (LPY66_20675) lonC 4477471..4479396 (-) 1926 WP_337986137.1 Lon family ATP-dependent protease -
  LPY66_RS20795 (LPY66_20680) rplI 4479494..4479940 (-) 447 WP_337986138.1 50S ribosomal protein L9 -
  LPY66_RS20800 (LPY66_20685) - 4479937..4480902 (-) 966 WP_337986139.1 DUF2232 domain-containing protein -
  LPY66_RS20805 (LPY66_20690) - 4480918..4481232 (-) 315 WP_337986140.1 MazG-like family protein -
  LPY66_RS20810 (LPY66_20695) rpsR 4481337..4481582 (-) 246 WP_337986141.1 37S ribosomal protein RSM18 -
  LPY66_RS20815 (LPY66_20700) ssbA 4481602..4482006 (-) 405 WP_337986142.1 single-stranded DNA-binding protein Machinery gene
  LPY66_RS20820 (LPY66_20705) rpsF 4482026..4482310 (-) 285 WP_337986143.1 30S ribosomal protein S6 -
  LPY66_RS20825 (LPY66_20710) ychF 4482414..4483514 (-) 1101 WP_337986144.1 redox-regulated ATPase YchF -
  LPY66_RS20830 (LPY66_20715) - 4483550..4483744 (-) 195 WP_337986145.1 DUF951 domain-containing protein -
  LPY66_RS20835 (LPY66_20720) - 4483760..4484428 (-) 669 WP_337986146.1 CvpA family protein -
  LPY66_RS20845 (LPY66_20730) - 4485165..4485377 (+) 213 WP_337986147.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14767.61 Da        Isoelectric Point: 5.2044

>NTDB_id=656471 LPY66_RS20815 WP_337986142.1 4481602..4482006(-) (ssbA) [Dehalobacter sp. DCM]
MLNRVVLIGRLTKDPELRYTPNGVAVASFTLAVDRNYKNSQGEKETDFIPCVVFRQLAELCANYLAKGKLAAVDGRIQVR
SFDGQDGQKRWVTEVLGENVRFLSPKDGNGGSVSAQNDFGSFAHEVSLDDDVPF

Nucleotide


Download         Length: 405 bp        

>NTDB_id=656471 LPY66_RS20815 WP_337986142.1 4481602..4482006(-) (ssbA) [Dehalobacter sp. DCM]
TTGTTAAATCGTGTTGTACTTATAGGGCGATTGACGAAAGACCCTGAATTGCGCTATACGCCAAATGGTGTCGCTGTGGC
ATCATTTACCTTGGCTGTTGACCGAAACTATAAGAATAGTCAGGGTGAAAAAGAAACAGATTTCATTCCCTGCGTCGTTT
TTCGACAGCTAGCCGAACTTTGTGCCAACTATTTGGCTAAAGGCAAACTAGCAGCTGTTGACGGCAGGATTCAGGTTCGT
TCATTTGATGGTCAGGATGGGCAGAAAAGATGGGTTACAGAGGTCCTTGGGGAGAATGTACGTTTCCTAAGTCCTAAGGA
TGGTAACGGGGGGTCTGTTTCCGCTCAGAATGATTTTGGATCTTTTGCACATGAAGTCAGTCTTGATGACGATGTGCCAT
TTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.486

79.851

0.515
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

79.104

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.741

100

0.41
  ssbB/cilA Streptococcus pneumoniae D39

40

100

0.403
  ssbB/cilA Streptococcus pneumoniae Rx1

40

100

0.403
  ssbB/cilA Streptococcus mitis NCTC 12261

40

100

0.403
  ssbB/cilA Streptococcus mitis SK321

40

100

0.403
  ssbB/cilA Streptococcus pneumoniae R6

40

100

0.403
  ssb Latilactobacillus sakei subsp. sakei 23K

50

79.104

0.396
  ssbA Streptococcus mutans UA159

37.037

100

0.373