Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L3Q72_RS02815 Genome accession   NZ_CP092106
Coordinates   591474..592730 (-) Length   418 a.a.
NCBI ID   WP_275131163.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 586474..597730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS02790 (L3Q72_02785) - 586756..588177 (+) 1422 WP_275131158.1 sodium:alanine symporter family protein -
  L3Q72_RS02795 (L3Q72_02790) yaaA 588265..589038 (+) 774 WP_275131159.1 peroxide stress protein YaaA -
  L3Q72_RS02800 (L3Q72_02795) zapD 589172..589912 (-) 741 WP_275131160.1 cell division protein ZapD -
  L3Q72_RS02805 (L3Q72_02800) coaE 589959..590558 (-) 600 WP_275131161.1 dephospho-CoA kinase -
  L3Q72_RS02810 (L3Q72_02805) pilD 590562..591431 (-) 870 WP_275131162.1 A24 family peptidase Machinery gene
  L3Q72_RS02815 (L3Q72_02810) pilC 591474..592730 (-) 1257 WP_275131163.1 type II secretion system F family protein Machinery gene
  L3Q72_RS02820 (L3Q72_02815) pilB 592705..594381 (-) 1677 WP_275131164.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L3Q72_RS02825 (L3Q72_02820) - 594382..594837 (-) 456 WP_275131165.1 pilin -
  L3Q72_RS02830 (L3Q72_02830) - 595197..596270 (+) 1074 WP_275131166.1 hypothetical protein -
  L3Q72_RS02835 (L3Q72_02835) - 596292..596843 (+) 552 WP_275131167.1 outer membrane beta-barrel protein -
  L3Q72_RS02840 (L3Q72_02840) - 596920..597471 (+) 552 WP_275131168.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 46601.95 Da        Isoelectric Point: 10.3237

>NTDB_id=655899 L3Q72_RS02815 WP_275131163.1 591474..592730(-) (pilC) [Vibrio sp. JC009]
MPKYSGFSDASGKTRHLPLKKYQWRGRLSNGQKAAGKLLALSELQAHQQLIKQDIRALKIRESSLSLSERILHKAGPRDI
TLFTRQLATMLNAGIPLLQALQMIAQNQEKAEVKSLLYLISGKVEAGTALSQAMRSVNPLFEGLYSDLIMAGEHSGQLPQ
LLDRLATYREKNEATRAQIIKAMIYPVMVLIVALGVSFLMLTTVVPQFETMFSGFNAELPWFTRQVLKLSEWLRSYTLWL
TGCSVVFCLALRWHYRRSAGFRLKVSKHLLRIPLFGQLITKSVISRFCRTMATSFSAGIPVLDGLKTGAKTAGNHHYEKV
IQRLAEQAASGMPIHIAMRKSQEFPDLVQQLIMIGEESGSLDQMMNKIATIYESEISNTVDNLGKLLEPLIVIILGLVVG
GLVISMYLPIFSLMNVLG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=655899 L3Q72_RS02815 WP_275131163.1 591474..592730(-) (pilC) [Vibrio sp. JC009]
ATGCCGAAATACAGCGGGTTCTCTGATGCTTCCGGCAAGACCAGGCACCTTCCGCTGAAAAAATACCAATGGCGGGGAAG
ACTCAGTAACGGCCAAAAAGCCGCGGGGAAATTGCTGGCACTGTCTGAACTACAGGCTCATCAGCAGCTTATTAAGCAGG
ATATCCGGGCGCTAAAGATAAGAGAAAGCAGCCTGTCGCTTTCTGAGCGAATCCTGCATAAAGCAGGCCCCCGTGACATC
ACCCTGTTCACCCGCCAGTTGGCCACCATGCTTAATGCCGGTATCCCGCTATTACAGGCACTGCAGATGATCGCTCAGAA
TCAGGAAAAGGCAGAGGTAAAGTCACTGCTTTATCTGATTTCAGGCAAAGTAGAAGCAGGAACGGCGTTATCCCAGGCAA
TGAGATCGGTTAACCCTCTGTTTGAGGGACTCTATTCAGATTTAATCATGGCAGGGGAGCATTCCGGACAACTTCCGCAA
CTGCTGGACAGACTGGCAACCTACAGAGAGAAAAATGAAGCCACCAGAGCACAGATTATTAAGGCGATGATCTACCCGGT
AATGGTTTTGATTGTCGCCCTTGGTGTCTCATTTCTTATGCTGACAACCGTGGTACCCCAGTTTGAGACCATGTTCAGCG
GCTTCAATGCAGAGCTTCCCTGGTTTACCCGGCAGGTATTAAAGTTATCGGAATGGCTGAGAAGCTATACCCTGTGGTTA
ACCGGCTGCTCCGTTGTTTTCTGCCTCGCCCTTCGCTGGCACTACCGGCGCTCTGCCGGGTTCAGGCTTAAGGTCAGCAA
ACATCTGCTCCGGATTCCGCTATTCGGACAACTAATAACAAAATCTGTTATATCCCGCTTTTGCCGCACTATGGCCACCA
GCTTTAGTGCCGGGATCCCGGTACTGGATGGTTTAAAAACAGGGGCGAAAACAGCAGGAAACCACCACTACGAAAAAGTG
ATTCAGAGACTGGCCGAGCAGGCAGCATCCGGAATGCCAATCCATATTGCCATGCGCAAAAGTCAGGAGTTCCCGGATCT
GGTTCAGCAACTGATCATGATAGGTGAAGAGTCCGGCAGCCTTGACCAAATGATGAATAAGATCGCAACTATTTACGAGT
CTGAAATCAGCAATACGGTAGATAATCTGGGTAAATTACTGGAGCCGCTGATCGTGATTATCTTAGGCCTTGTGGTCGGA
GGGCTGGTTATTTCAATGTATCTTCCAATCTTTAGTTTAATGAATGTGTTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

54.568

96.89

0.529
  pilC Vibrio campbellii strain DS40M4

52

95.694

0.498
  pilC Acinetobacter baylyi ADP1

39.806

98.565

0.392
  pilG Neisseria meningitidis 44/76-A

38.588

100

0.392
  pilG Neisseria gonorrhoeae MS11

38.626

100

0.39
  pilC Acinetobacter baumannii D1279779

39.609

97.847

0.388
  pilC Pseudomonas stutzeri DSM 10701

40.657

94.737

0.385
  pilC Legionella pneumophila strain ERS1305867

39.899

94.737

0.378