NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	L3Q72_RS02810	Genome accession	NZ_CP092106
Coordinates	590562..591431 (-)	Length	289 a.a.
NCBI ID	WP_275131162.1	Uniprot ID	-
Organism	Vibrio sp. JC009
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 585562..596431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3Q72_RS02780 (L3Q72_02775)	-	585699..586265 (+)	567	WP_275131156.1	hemerythrin domain-containing protein	-
L3Q72_RS02785 (L3Q72_02780)	-	586312..586494 (-)	183	WP_275131157.1	DUF3545 family protein	-
L3Q72_RS02790 (L3Q72_02785)	-	586756..588177 (+)	1422	WP_275131158.1	sodium:alanine symporter family protein	-
L3Q72_RS02795 (L3Q72_02790)	yaaA	588265..589038 (+)	774	WP_275131159.1	peroxide stress protein YaaA	-
L3Q72_RS02800 (L3Q72_02795)	zapD	589172..589912 (-)	741	WP_275131160.1	cell division protein ZapD	-
L3Q72_RS02805 (L3Q72_02800)	coaE	589959..590558 (-)	600	WP_275131161.1	dephospho-CoA kinase	-
L3Q72_RS02810 (L3Q72_02805)	pilD	590562..591431 (-)	870	WP_275131162.1	A24 family peptidase	Machinery gene
L3Q72_RS02815 (L3Q72_02810)	pilC	591474..592730 (-)	1257	WP_275131163.1	type II secretion system F family protein	Machinery gene
L3Q72_RS02820 (L3Q72_02815)	pilB	592705..594381 (-)	1677	WP_275131164.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L3Q72_RS02825 (L3Q72_02820)	-	594382..594837 (-)	456	WP_275131165.1	pilin	-
L3Q72_RS02830 (L3Q72_02830)	-	595197..596270 (+)	1074	WP_275131166.1	hypothetical protein	-

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 32359.81 Da Isoelectric Point: 6.8140

                                >NTDB_id=655898 L3Q72_RS02810 WP_275131162.1 590562..591431(-) (pilD) [Vibrio sp. JC009]

MEMFLVYPWLFPLFAGVFGLIIGSFLNVVIHRLPIMMEREWKQDCAEAFPELNIPVETETFNLSKPRSHCPKCNTPIRLI

DNIPLLSWIMLRGKCHKCAHPISIRYPLVELLTAAMCTVVALEMGFSYFAVAALFFTFVLICATFIDFDTMLLPDSLTLP

LMWGGIALSLMDISPVSLTDSVIGAMAGYLCLWSVYWIFKILTGKEGMGYGDFKLLAALGAWLGWQSLPMVVLGSSMVGL

VFGIIQLRMQKKGIDKSFPFGPYLAIAGWITLLWGNSIINWYFTSVLGL

Nucleotide

Download Length: 870 bp

                                >NTDB_id=655898 L3Q72_RS02810 WP_275131162.1 590562..591431(-) (pilD) [Vibrio sp. JC009]

ATGGAAATGTTTTTAGTTTACCCCTGGCTTTTTCCCCTGTTTGCCGGTGTTTTTGGATTGATTATTGGTAGCTTCCTGAA

CGTTGTTATCCACCGCCTTCCTATTATGATGGAGCGGGAGTGGAAGCAAGATTGCGCTGAAGCCTTCCCAGAACTGAATA

TTCCCGTAGAGACAGAGACTTTTAACTTAAGTAAACCGCGCTCACACTGCCCGAAATGCAATACGCCAATCCGGCTAATT

GACAATATCCCGCTTCTGAGCTGGATTATGCTCAGAGGCAAGTGCCACAAGTGCGCCCACCCTATCAGCATCCGCTACCC

GTTAGTCGAACTGCTTACAGCTGCGATGTGCACTGTGGTGGCACTGGAAATGGGCTTTAGTTACTTTGCTGTTGCAGCCC

TGTTTTTCACCTTTGTGCTTATCTGCGCCACCTTTATCGACTTTGATACCATGCTGCTGCCTGACTCACTAACGCTTCCG

CTGATGTGGGGCGGGATAGCTCTGTCGCTGATGGATATCAGCCCGGTTTCCCTAACCGATTCTGTTATCGGCGCTATGGC

CGGCTACCTCTGTTTATGGTCGGTTTACTGGATATTTAAAATCCTTACCGGAAAAGAAGGGATGGGGTATGGCGACTTTA

AGCTCCTGGCCGCCTTAGGTGCCTGGCTGGGCTGGCAGTCTCTGCCTATGGTGGTGCTCGGTTCATCCATGGTGGGACTG

GTGTTCGGTATTATTCAGTTAAGAATGCAAAAAAAAGGCATTGATAAATCCTTTCCCTTCGGCCCTTATCTGGCGATAGC

AGGCTGGATTACCCTTTTATGGGGAAACAGTATTATTAACTGGTATTTCACTTCAGTTCTGGGACTATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-123)

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio campbellii strain DS40M4	70.934	100	0.709
pilD	Vibrio cholerae strain A1552	69.792	99.654	0.696
pilD	Neisseria gonorrhoeae MS11	48.789	100	0.488
pilD	Acinetobacter nosocomialis M2	51.894	91.349	0.474
pilD	Acinetobacter baumannii D1279779	51.136	91.349	0.467

Detailed information NTG0655898