Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JN531_RS02095 Genome accession   NZ_CP092104
Coordinates   427065..428282 (+) Length   405 a.a.
NCBI ID   WP_228347203.1    Uniprot ID   -
Organism   Flagellatimonas centrodinii strain R2A-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422065..433282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN531_RS02075 (JN531_002075) - 422471..423049 (-) 579 WP_228347199.1 hypothetical protein -
  JN531_RS02080 (JN531_002080) rnd 423113..424210 (+) 1098 WP_228347200.1 ribonuclease D -
  JN531_RS02085 (JN531_002085) - 424239..425210 (+) 972 WP_228347201.1 MBL fold metallo-hydrolase -
  JN531_RS02090 (JN531_002090) pilB 425273..427003 (+) 1731 WP_366522457.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JN531_RS02095 (JN531_002095) pilC 427065..428282 (+) 1218 WP_228347203.1 type II secretion system F family protein Machinery gene
  JN531_RS02100 (JN531_002100) pilD 428282..429151 (+) 870 WP_275591474.1 A24 family peptidase Machinery gene
  JN531_RS02105 (JN531_002105) coaE 429148..429765 (+) 618 WP_228347204.1 dephospho-CoA kinase -
  JN531_RS02110 (JN531_002110) zapD 429819..430595 (+) 777 WP_228347205.1 cell division protein ZapD -
  JN531_RS02115 (JN531_002115) - 430592..430795 (+) 204 WP_228347206.1 DNA gyrase inhibitor YacG -
  JN531_RS02120 (JN531_002120) - 431065..432033 (-) 969 WP_228347207.1 Nudix family hydrolase -
  JN531_RS02125 (JN531_002125) argJ 432030..433250 (-) 1221 WP_228347208.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44062.85 Da        Isoelectric Point: 9.4490

>NTDB_id=655869 JN531_RS02095 WP_228347203.1 427065..428282(+) (pilC) [Flagellatimonas centrodinii strain R2A-3]
MATAAVKEYPFKWEGVDKKGNRIKGQSIGPNADHIKLYLRKQGINPIAVRKASTLFSKGKGTIESIDIAVFSRQMSTMLS
SGVPLVQALEIIGRGHDKPAMGEMIMGIKTHIEGGSSFSEALGKYPLYFDDLFVNLVDAGERSGALETLLDKIATYKEKT
EALKKKVKKALTYPIAVLVVAFIVTGILLYFVVPQFQDLFQGFGADLPAFTQMVINLSKWMQANGIQMVFVIGASIAGFI
ALKKRSEKFRRILDRVSLKIPIVGDILHKSAVARFARTLSTMFAAGVPLVEAMDSVAKAAGNIVYTEAIHTMRDQVATGQ
QLQLTMEQSGMFPNMATQMVAIGEESGSLDAMCAKVADFYEAEVDNLVDNLTALMEPFIMSVLGVLVGGLVVAMYLPIFK
MGQAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=655869 JN531_RS02095 WP_228347203.1 427065..428282(+) (pilC) [Flagellatimonas centrodinii strain R2A-3]
ATGGCGACTGCCGCAGTCAAGGAGTATCCCTTCAAGTGGGAAGGGGTCGACAAGAAGGGCAACCGGATCAAGGGCCAGTC
GATCGGCCCCAATGCCGACCACATCAAACTCTATCTGCGCAAACAGGGGATCAACCCGATCGCCGTGCGCAAGGCCTCGA
CCCTGTTTTCCAAGGGCAAGGGGACCATCGAATCGATCGATATCGCTGTGTTCAGTCGGCAGATGTCGACCATGCTGTCG
TCCGGCGTACCGCTGGTGCAGGCGCTGGAGATCATCGGCCGTGGCCACGACAAGCCGGCCATGGGCGAGATGATCATGGG
CATCAAGACCCATATCGAGGGTGGCTCTTCGTTCTCCGAAGCGCTCGGCAAGTACCCGCTGTACTTCGACGATCTGTTCG
TCAATCTGGTGGATGCCGGTGAACGGTCGGGCGCGCTGGAAACCCTGCTCGACAAGATCGCCACCTACAAGGAAAAGACC
GAAGCACTGAAAAAGAAGGTGAAGAAGGCGCTGACCTACCCGATCGCGGTACTGGTGGTGGCCTTCATCGTCACCGGCAT
CCTGCTTTACTTCGTTGTGCCGCAGTTCCAGGACCTCTTCCAGGGCTTTGGCGCCGACCTGCCGGCCTTCACCCAGATGG
TGATCAACCTGTCGAAATGGATGCAGGCTAACGGCATCCAGATGGTCTTTGTCATCGGCGCATCGATTGCCGGCTTCATC
GCCCTGAAGAAACGTTCGGAGAAGTTCCGCCGCATTCTCGACCGGGTATCGCTGAAGATTCCCATCGTTGGCGACATTCT
CCACAAGTCGGCCGTGGCGCGGTTTGCCCGCACGCTGTCGACCATGTTCGCCGCCGGGGTGCCGCTGGTGGAAGCGATGG
ATTCGGTGGCCAAGGCCGCTGGCAACATCGTTTACACCGAAGCCATCCACACCATGCGGGACCAGGTGGCCACCGGCCAA
CAGCTGCAGCTGACCATGGAGCAGTCGGGCATGTTCCCCAACATGGCGACACAGATGGTCGCGATCGGCGAGGAATCGGG
CTCGCTCGACGCCATGTGCGCCAAGGTGGCGGACTTCTATGAAGCCGAGGTGGACAACCTGGTCGACAACCTGACGGCGC
TGATGGAGCCCTTCATCATGTCGGTGCTCGGCGTCCTGGTCGGCGGCCTGGTGGTGGCCATGTACCTGCCGATCTTCAAG
ATGGGTCAGGCGATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.459

100

0.598
  pilC Acinetobacter baumannii D1279779

56.423

98.025

0.553
  pilC Legionella pneumophila strain ERS1305867

54.912

98.025

0.538
  pilC Acinetobacter baylyi ADP1

54.156

98.025

0.531
  pilG Neisseria gonorrhoeae MS11

46.517

99.259

0.462
  pilG Neisseria meningitidis 44/76-A

46.517

99.259

0.462
  pilC Vibrio campbellii strain DS40M4

42.327

99.753

0.422
  pilC Vibrio cholerae strain A1552

42.145

99.012

0.417