Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JN531_RS02100 Genome accession   NZ_CP092104
Coordinates   428282..429151 (+) Length   289 a.a.
NCBI ID   WP_275591474.1    Uniprot ID   -
Organism   Flagellatimonas centrodinii strain R2A-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423282..434151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN531_RS02085 (JN531_002085) - 424239..425210 (+) 972 WP_228347201.1 MBL fold metallo-hydrolase -
  JN531_RS02090 (JN531_002090) pilB 425273..427003 (+) 1731 WP_366522457.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JN531_RS02095 (JN531_002095) pilC 427065..428282 (+) 1218 WP_228347203.1 type II secretion system F family protein Machinery gene
  JN531_RS02100 (JN531_002100) pilD 428282..429151 (+) 870 WP_275591474.1 A24 family peptidase Machinery gene
  JN531_RS02105 (JN531_002105) coaE 429148..429765 (+) 618 WP_228347204.1 dephospho-CoA kinase -
  JN531_RS02110 (JN531_002110) zapD 429819..430595 (+) 777 WP_228347205.1 cell division protein ZapD -
  JN531_RS02115 (JN531_002115) - 430592..430795 (+) 204 WP_228347206.1 DNA gyrase inhibitor YacG -
  JN531_RS02120 (JN531_002120) - 431065..432033 (-) 969 WP_228347207.1 Nudix family hydrolase -
  JN531_RS02125 (JN531_002125) argJ 432030..433250 (-) 1221 WP_228347208.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 30989.94 Da        Isoelectric Point: 7.9271

>NTDB_id=655870 JN531_RS02100 WP_275591474.1 428282..429151(+) (pilD) [Flagellatimonas centrodinii strain R2A-3]
MSPLVELLAGNLGLLITLTLVLGLLVGSFLNVVALRLPAMMERDWRIEARQILELPAEAEPPLSLTQPPSTCPQCRQRIR
PWHNIPVIGWLWLRGRCADCAAPISPQYPLVELACGLLSAACAWRFGWGPELAAALVLTWSLLVLAVIDARTTLLPDSIT
LPLLWAGLLLALVPLQASLSSAVIGAAAGYLSLWSVYWAFKLLTGKEGMGYGDFKLFAALGAWLGWQQLLLIILLSSVVG
AVVGIGLILARNRGRDLQIPFGPYLAAAGWIALVAGDTITAAYLRSAGL

Nucleotide


Download         Length: 870 bp        

>NTDB_id=655870 JN531_RS02100 WP_275591474.1 428282..429151(+) (pilD) [Flagellatimonas centrodinii strain R2A-3]
GTGTCGCCACTGGTCGAGCTGCTGGCCGGCAACCTCGGCCTGCTGATCACATTGACGCTGGTGCTCGGCCTGCTGGTCGG
CAGCTTTCTCAATGTGGTCGCCCTGCGGTTGCCGGCGATGATGGAGCGAGACTGGCGAATCGAGGCCCGTCAGATTCTGG
AACTACCCGCCGAGGCCGAGCCACCGCTGTCGCTCACCCAACCGCCGTCGACCTGCCCGCAGTGCCGCCAGCGTATCCGC
CCCTGGCACAACATTCCGGTGATCGGCTGGCTATGGTTGCGGGGACGCTGTGCCGATTGCGCCGCGCCCATCTCACCGCA
ATACCCGCTGGTGGAGCTGGCCTGCGGGCTGCTGTCGGCCGCCTGTGCCTGGCGCTTCGGCTGGGGCCCCGAACTGGCGG
CGGCGCTGGTGTTGACCTGGAGCCTGCTGGTGCTGGCCGTCATTGACGCCCGCACCACCCTGCTGCCGGACAGCATCACC
CTGCCGCTGCTGTGGGCCGGTCTGCTGTTGGCACTGGTGCCGCTGCAGGCCTCGCTGTCGTCGGCGGTCATCGGCGCGGC
GGCCGGCTACCTCAGCCTGTGGTCGGTGTACTGGGCGTTCAAACTGCTGACCGGCAAGGAAGGCATGGGTTACGGCGACT
TCAAGCTGTTCGCCGCCCTCGGTGCCTGGCTGGGGTGGCAGCAACTGCTGCTGATCATCCTGCTGTCGTCGGTGGTCGGG
GCGGTGGTGGGCATCGGCCTGATCCTCGCCCGCAATCGTGGCCGCGATCTCCAGATTCCGTTTGGTCCCTATCTCGCCGC
AGCGGGCTGGATCGCCCTGGTGGCGGGGGACACCATCACCGCCGCCTATCTGCGTAGCGCCGGCCTGTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(136-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.676

96.194

0.526
  pilD Vibrio campbellii strain DS40M4

51.625

95.848

0.495
  pilD Acinetobacter baumannii D1279779

47.552

98.962

0.471
  pilD Acinetobacter nosocomialis M2

47.203

98.962

0.467
  pilD Neisseria gonorrhoeae MS11

49.248

92.042

0.453