NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG565_RS23365	Genome accession	NZ_CP108177
Coordinates	5441473..5442090 (+)	Length	205 a.a.
NCBI ID	WP_328917810.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00138
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5436473..5447090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG565_RS23335 (OG565_23375)	-	5437431..5437625 (+)	195	WP_328913559.1	hypothetical protein	-
OG565_RS23340 (OG565_23380)	-	5437590..5438645 (-)	1056	WP_328913558.1	asparaginase	-
OG565_RS23345 (OG565_23385)	-	5438766..5439218 (+)	453	WP_328913557.1	Lrp/AsnC family transcriptional regulator	-
OG565_RS23360 (OG565_23400)	tig	5439750..5441180 (+)	1431	WP_328913556.1	trigger factor	-
OG565_RS23365 (OG565_23405)	clpP	5441473..5442090 (+)	618	WP_328917810.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG565_RS23370 (OG565_23410)	clpP	5442185..5442880 (+)	696	WP_405785626.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG565_RS23375 (OG565_23415)	clpX	5443096..5444379 (+)	1284	WP_328913555.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG565_RS23380 (OG565_23420)	-	5444461..5445480 (-)	1020	WP_328913554.1	hypothetical protein	-

Sequence

Protein

Download Length: 205 a.a. Molecular weight: 21608.63 Da Isoelectric Point: 4.9726

                                >NTDB_id=655581 OG565_RS23365 WP_328917810.1 5441473..5442090(+) (clpP) [Streptomyces sp. NBC_00138]

MPSAAGEPTFGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAAEPDKDIFLYINSPGGSVTAGMAIYDTMQFI

KNDVVTIAMGMAASMGQFLLTAGTPGKRFALPNTRILMHQPSAGLGGSATDIKIQAEQLLHTKRRMAELIAQHSGQTFEQ

ITKDSDRDRWFSAEEAKEYGLLDGVMLSAAHVPGGGGTGAGGPAA

Nucleotide

Download Length: 618 bp

                                >NTDB_id=655581 OG565_RS23365 WP_328917810.1 5441473..5442090(+) (clpP) [Streptomyces sp. NBC_00138]

ATGCCTTCCGCCGCCGGCGAGCCGACCTTCGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGAATCAT

CTTCCTCGGCCAGGCTGTCGACGATGACATCGCCAACAAGATCACCGCGCAGCTGCTCCTCCTTGCCGCGGAACCGGACA

AGGACATCTTCCTCTACATCAACAGCCCCGGCGGCTCCGTGACCGCCGGTATGGCGATCTACGACACCATGCAGTTCATC

AAGAACGACGTGGTCACCATCGCCATGGGCATGGCCGCCTCGATGGGCCAGTTCCTGCTCACCGCGGGCACCCCCGGCAA

GCGGTTCGCGCTGCCGAACACCCGCATCCTGATGCACCAGCCCTCCGCGGGCCTGGGCGGCTCCGCGACCGACATCAAGA

TCCAGGCCGAGCAGCTGCTGCACACCAAGCGCCGGATGGCCGAGCTGATCGCCCAGCACTCCGGCCAGACCTTCGAGCAG

ATCACCAAGGACTCCGACCGCGACCGCTGGTTCTCCGCCGAGGAGGCCAAGGAGTACGGCCTGCTGGACGGCGTCATGCT

CTCCGCCGCGCATGTCCCGGGCGGCGGCGGCACCGGCGCCGGCGGCCCGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-186)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	54.545	91.22	0.498
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.872	91.22	0.473
clpP	Lactococcus lactis subsp. cremoris KW2	51.323	92.195	0.473
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.794	92.195	0.468
clpP	Streptococcus pyogenes JRS4	50.265	92.195	0.463
clpP	Streptococcus pyogenes MGAS315	50.265	92.195	0.463
clpP	Streptococcus mutans UA159	49.206	92.195	0.454
clpP	Streptococcus thermophilus LMG 18311	48.677	92.195	0.449
clpP	Streptococcus thermophilus LMD-9	48.677	92.195	0.449
clpP	Streptococcus pneumoniae Rx1	48.148	92.195	0.444
clpP	Streptococcus pneumoniae D39	48.148	92.195	0.444
clpP	Streptococcus pneumoniae R6	48.148	92.195	0.444
clpP	Streptococcus pneumoniae TIGR4	48.148	92.195	0.444

Detailed information NTG0655581