Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG565_RS23370 Genome accession   NZ_CP108177
Coordinates   5442185..5442880 (+) Length   231 a.a.
NCBI ID   WP_405785626.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00138     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5437185..5447880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG565_RS23335 (OG565_23375) - 5437431..5437625 (+) 195 WP_328913559.1 hypothetical protein -
  OG565_RS23340 (OG565_23380) - 5437590..5438645 (-) 1056 WP_328913558.1 asparaginase -
  OG565_RS23345 (OG565_23385) - 5438766..5439218 (+) 453 WP_328913557.1 Lrp/AsnC family transcriptional regulator -
  OG565_RS23360 (OG565_23400) tig 5439750..5441180 (+) 1431 WP_328913556.1 trigger factor -
  OG565_RS23365 (OG565_23405) clpP 5441473..5442090 (+) 618 WP_328917810.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG565_RS23370 (OG565_23410) clpP 5442185..5442880 (+) 696 WP_405785626.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG565_RS23375 (OG565_23415) clpX 5443096..5444379 (+) 1284 WP_328913555.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG565_RS23380 (OG565_23420) - 5444461..5445480 (-) 1020 WP_328913554.1 hypothetical protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25541.95 Da        Isoelectric Point: 4.5212

>NTDB_id=655582 OG565_RS23370 WP_405785626.1 5442185..5442880(+) (clpP) [Streptomyces sp. NBC_00138]
MNPLNFPGSGLYERTEAERPGVFSAEARYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLES
MDPDRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGSPGKRMALPNARVLIHQPYSETGRGQ
VSDLEIAANEIIRMRQQLEEMLAKHSTTPIEQIRDDIERDKILTAEESLAYGLVDQIVSTRKTSVSSEIPH

Nucleotide


Download         Length: 696 bp        

>NTDB_id=655582 OG565_RS23370 WP_405785626.1 5442185..5442880(+) (clpP) [Streptomyces sp. NBC_00138]
GTGAACCCCTTGAACTTCCCCGGCAGCGGCCTGTACGAGCGCACCGAGGCCGAGCGCCCCGGCGTGTTCTCCGCCGAGGC
CCGCTATGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGG
AGCGGGTGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCCCAGCTGCTGTGCCTGGAGTCG
ATGGACCCCGACCGTGACATCTCCGTCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCGATCTACGACAC
CATGCAGTTCGTGAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTGGCCGCCG
GCAGCCCCGGCAAGCGGATGGCCCTGCCGAACGCGCGGGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGTCAG
GTCTCCGACCTGGAGATCGCGGCGAACGAGATCATCCGGATGCGCCAGCAGCTGGAGGAGATGCTCGCCAAGCACTCCAC
CACGCCGATCGAGCAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACCGCCGAGGAGTCGCTGGCCTACGGTCTGG
TCGACCAGATCGTGTCCACCCGCAAGACTTCCGTGTCCTCCGAGATCCCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(40-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

82.251

0.42
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

81.385

0.39
  clpP Streptococcus mutans UA159

45.876

83.983

0.385
  clpP Streptococcus pyogenes JRS4

46.316

82.251

0.381
  clpP Streptococcus pyogenes MGAS315

46.316

82.251

0.381
  clpP Streptococcus thermophilus LMD-9

44.33

83.983

0.372
  clpP Streptococcus thermophilus LMG 18311

44.33

83.983

0.372
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

82.684

0.368
  clpP Streptococcus pneumoniae Rx1

44.041

83.55

0.368
  clpP Streptococcus pneumoniae D39

44.041

83.55

0.368
  clpP Streptococcus pneumoniae R6

44.041

83.55

0.368
  clpP Streptococcus pneumoniae TIGR4

44.041

83.55

0.368