Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT93_RS12965 Genome accession   NZ_CP108130
Coordinates   2873930..2874547 (-) Length   205 a.a.
NCBI ID   WP_266476368.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2868930..2879547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS12950 (OHT93_12915) - 2870763..2871710 (+) 948 WP_406267900.1 hypothetical protein -
  OHT93_RS12955 (OHT93_12920) clpX 2871776..2873068 (-) 1293 WP_266476371.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT93_RS12960 (OHT93_12925) clpP 2873214..2873888 (-) 675 WP_323136031.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT93_RS12965 (OHT93_12930) clpP 2873930..2874547 (-) 618 WP_266476368.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT93_RS12970 (OHT93_12935) tig 2874777..2876174 (-) 1398 WP_406267904.1 trigger factor -
  OHT93_RS12985 (OHT93_12950) - 2876794..2876988 (-) 195 WP_266476365.1 hypothetical protein -
  OHT93_RS12990 (OHT93_12955) - 2877410..2878564 (+) 1155 WP_406267906.1 acyltransferase family protein -
  OHT93_RS12995 (OHT93_12960) - 2878662..2879120 (-) 459 WP_406267909.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21614.58 Da        Isoelectric Point: 4.6752

>NTDB_id=654571 OHT93_RS12965 WP_266476368.1 2873930..2874547(-) (clpP) [Streptomyces sp. NBC_00191]
MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDEIANKITAQMLLLAAEPDKDIYLYINSPGGSVTAGMAIYD
TMQYIPNDVVTIGMGMAASMGQFLLTGGSAGKRFALPNTDILMHQGSAGIGGTASDIKIQAEYLLRTKKRMAEITALHSG
QTVETIIRDGDRDRWYTAEEAKAYGLIDEIISAASGVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=654571 OHT93_RS12965 WP_266476368.1 2873930..2874547(-) (clpP) [Streptomyces sp. NBC_00191]
GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CGGCGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACGGCGCAGATGCTGCTCCTGG
CCGCCGAGCCGGACAAGGACATCTACCTCTACATCAACAGCCCCGGTGGCTCGGTGACGGCCGGCATGGCGATCTACGAC
ACCATGCAGTACATCCCGAACGACGTGGTCACGATCGGTATGGGTATGGCGGCCTCGATGGGCCAGTTCCTGCTCACCGG
CGGCAGCGCGGGCAAGCGCTTCGCGCTCCCGAACACCGACATTCTGATGCACCAGGGATCGGCCGGCATCGGCGGCACCG
CCTCGGACATCAAGATCCAGGCCGAGTATCTGCTTCGCACGAAGAAGCGCATGGCGGAGATCACCGCCCTCCACTCCGGC
CAGACCGTCGAGACGATCATCCGCGACGGTGACCGCGACCGCTGGTACACCGCGGAAGAGGCCAAGGCCTACGGCCTCAT
CGACGAGATCATCTCCGCCGCATCGGGCGTTCCGGGCGGCGGCGGCACCGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.832

93.171

0.483
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

92.683

0.478
  clpP Lactococcus lactis subsp. cremoris KW2

50.532

91.707

0.463
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50

91.707

0.459
  clpP Streptococcus mutans UA159

52.601

84.39

0.444
  clpP Streptococcus pyogenes MGAS315

51.445

84.39

0.434
  clpP Streptococcus pyogenes JRS4

51.445

84.39

0.434
  clpP Streptococcus pneumoniae TIGR4

49.718

86.341

0.429
  clpP Streptococcus pneumoniae D39

49.718

86.341

0.429
  clpP Streptococcus pneumoniae R6

49.718

86.341

0.429
  clpP Streptococcus pneumoniae Rx1

49.718

86.341

0.429
  clpP Streptococcus thermophilus LMD-9

50

84.878

0.424
  clpP Streptococcus thermophilus LMG 18311

50

84.878

0.424