Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT93_RS12960 Genome accession   NZ_CP108130
Coordinates   2873214..2873888 (-) Length   224 a.a.
NCBI ID   WP_323136031.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2868214..2878888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS12950 (OHT93_12915) - 2870763..2871710 (+) 948 WP_406267900.1 hypothetical protein -
  OHT93_RS12955 (OHT93_12920) clpX 2871776..2873068 (-) 1293 WP_266476371.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT93_RS12960 (OHT93_12925) clpP 2873214..2873888 (-) 675 WP_323136031.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT93_RS12965 (OHT93_12930) clpP 2873930..2874547 (-) 618 WP_266476368.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT93_RS12970 (OHT93_12935) tig 2874777..2876174 (-) 1398 WP_406267904.1 trigger factor -
  OHT93_RS12985 (OHT93_12950) - 2876794..2876988 (-) 195 WP_266476365.1 hypothetical protein -
  OHT93_RS12990 (OHT93_12955) - 2877410..2878564 (+) 1155 WP_406267906.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24581.99 Da        Isoelectric Point: 4.6814

>NTDB_id=654570 OHT93_RS12960 WP_323136031.1 2873214..2873888(-) (clpP) [Streptomyces sp. NBC_00191]
MVNTHMSNFPASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDR
DISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILIHQPSSQTGREQLSDLE
IAANEILRMRTQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKTTAAAAA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=654570 OHT93_RS12960 WP_323136031.1 2873214..2873888(-) (clpP) [Streptomyces sp. NBC_00191]
ATGGTGAACACCCACATGAGTAACTTCCCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTACGTCGTCCC
GCGCTTCGTCGAGCGCACCTCCCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTCATCTTCC
TCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGC
GACATCTCCATCTACATCAACAGCCCCGGCGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTTCGTGAA
GCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGTACGCCCGGCAAGC
GGATGGCTCTGCCGAACGCCCGCATCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCCGACCTGGAG
ATCGCGGCCAACGAAATCCTGCGGATGCGTACGCAGCTGGAAGAGATGCTGGCCAAGCACTCCACCACGCCGATCGAGAA
GATCCGTGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCGCTTGCGTACGGCCTCGTCGACCAGATCGTCT
CGACCCGTAAGACCACGGCCGCAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(35-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

84.821

0.424
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

83.929

0.411
  clpP Streptococcus thermophilus LMD-9

44.845

86.607

0.388
  clpP Streptococcus pyogenes JRS4

44.845

86.607

0.388
  clpP Streptococcus pyogenes MGAS315

44.845

86.607

0.388
  clpP Streptococcus thermophilus LMG 18311

44.845

86.607

0.388
  clpP Streptococcus mutans UA159

45.263

84.821

0.384
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

85.268

0.379
  clpP Streptococcus pneumoniae R6

44.041

86.161

0.379
  clpP Streptococcus pneumoniae TIGR4

44.041

86.161

0.379
  clpP Streptococcus pneumoniae D39

44.041

86.161

0.379
  clpP Streptococcus pneumoniae Rx1

44.041

86.161

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

85.268

0.375