Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHU08_RS13670 Genome accession   NZ_CP108128
Coordinates   3130902..3131507 (-) Length   201 a.a.
NCBI ID   WP_060897745.1    Uniprot ID   A0ABW3XCQ8
Organism   Streptomyces sp. NBC_00197     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125902..3136507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS13650 (OHU08_13645) - 3127083..3128075 (+) 993 WP_164369330.1 hypothetical protein -
  OHU08_RS13655 (OHU08_13650) - 3128174..3128458 (-) 285 WP_266613689.1 hypothetical protein -
  OHU08_RS13660 (OHU08_13655) clpX 3128657..3129943 (-) 1287 WP_081221566.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHU08_RS13665 (OHU08_13660) clpP 3130104..3130784 (-) 681 WP_081217263.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHU08_RS13670 (OHU08_13665) clpP 3130902..3131507 (-) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHU08_RS13675 (OHU08_13670) tig 3131932..3133317 (-) 1386 WP_164369328.1 trigger factor -
  OHU08_RS13690 (OHU08_13685) - 3134050..3134244 (-) 195 WP_016435177.1 hypothetical protein -
  OHU08_RS13695 (OHU08_13690) - 3134892..3136070 (+) 1179 WP_164369326.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21293.25 Da        Isoelectric Point: 4.6663

>NTDB_id=654493 OHU08_RS13670 WP_060897745.1 3130902..3131507(-) (clpP) [Streptomyces sp. NBC_00197]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQYI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITRDSDRDRWFDPIEAKEYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=654493 OHU08_RS13670 WP_060897745.1 3130902..3131507(-) (clpP) [Streptomyces sp. NBC_00197]
ATGCCCACAGCTGCCGGCGACCCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGATGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCTCCGACCCGGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACGATCGCGATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCGGGTACGCCCGGCAA
GCGTTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCGTCCGCGGGTCTCGCGGGCTCGGCCTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCCTTCCACACCGGTCAGACCGTCGAGCAG
ATCACTCGTGACTCGGACCGCGACCGCTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCATGCC
CACCGCTGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.615

93.035

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

94.03

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

94.03

0.488
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.598

86.567

0.473
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMD-9

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

51.445

86.07

0.443
  clpP Streptococcus pneumoniae D39

51.445

86.07

0.443
  clpP Streptococcus pneumoniae R6

51.445

86.07

0.443
  clpP Streptococcus pneumoniae TIGR4

51.445

86.07

0.443