Detailed information NTG0654491

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHU08_RS13660
• Genome accession: NZ_CP108128
• Coordinates: 3128657..3129943 (-)
• Length: 428 a.a.
• NCBI ID: WP_081221566.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00197
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3123657..3134943

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHU08_RS13645 (OHU08_13640)	-	3124322..3126946 (-)	2625	WP_266848536.1	valine--tRNA ligase	-
OHU08_RS13650 (OHU08_13645)	-	3127083..3128075 (+)	993	WP_164369330.1	hypothetical protein	-
OHU08_RS13655 (OHU08_13650)	-	3128174..3128458 (-)	285	WP_266613689.1	hypothetical protein	-
OHU08_RS13660 (OHU08_13655)	clpX	3128657..3129943 (-)	1287	WP_081221566.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHU08_RS13665 (OHU08_13660)	clpP	3130104..3130784 (-)	681	WP_081217263.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU08_RS13670 (OHU08_13665)	clpP	3130902..3131507 (-)	606	WP_060897745.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU08_RS13675 (OHU08_13670)	tig	3131932..3133317 (-)	1386	WP_164369328.1	trigger factor	-
OHU08_RS13690 (OHU08_13685)	-	3134050..3134244 (-)	195	WP_016435177.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46912.71 Da
• Isoelectric Point: 4.7360

>NTDB_id=654491 OHU08_RS13660 WP_081221566.1 3128657..3129943(-) (clpX) [Streptomyces sp. NBC_00197]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENSAGQNREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELESKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQAVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARRGGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=654491 OHU08_RS13660 WP_081221566.1 3128657..3129943(-) (clpX) [Streptomyces sp. NBC_00197]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTGCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGATACGTCGTCGGACAGGAGTCC
GCGAAGAAGGCGCTCTCCGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACAGCGCGGGCCAGAACCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTGGGCCCCACGGGCTCCGGCAAGACGCTGCTCGCCCAGA
CCCTCGCGCGCATGCTGAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCGGGATATGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTCATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTGGCCCGCAAGAGCGAGAACCCGTCGATCACGCGTGACGTCTCCGGTGAGGGTGTCCAGCAGGCCC
TGCTCAAGATCCTCGAGGGCACGACGGCCTCGGTCCCGCCGCAGGGCGGACGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGAGCCTTCGCCGGCCTGGAGAAGCTCATCGAGTCGAGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCGAAGCGGGAGCTGGAGTCCAAGGACCAGTTCGAGGACGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGGCGTCTCCCGGTGATCACCTCGGTCCACAACCTGGACCGC
GAGGCCCTCCTCCAGATCCTCGTCGAGCCGCGCAACGCGCTGGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGAGGCCTGC
GCGCGATCATGGAGGAAGTCCTCCAGGCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTGGTCATCACC
GCCGACGTCGTCCTGTCGAACGTCAACCCGACCCTGATCCCCAGGGACGCCCGCCGCGGCGGCCCGGGCGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.438	93.925	0.586
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521