Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHU08_RS13665 Genome accession   NZ_CP108128
Coordinates   3130104..3130784 (-) Length   226 a.a.
NCBI ID   WP_081217263.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00197     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125104..3135784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS13650 (OHU08_13645) - 3127083..3128075 (+) 993 WP_164369330.1 hypothetical protein -
  OHU08_RS13655 (OHU08_13650) - 3128174..3128458 (-) 285 WP_266613689.1 hypothetical protein -
  OHU08_RS13660 (OHU08_13655) clpX 3128657..3129943 (-) 1287 WP_081221566.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHU08_RS13665 (OHU08_13660) clpP 3130104..3130784 (-) 681 WP_081217263.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHU08_RS13670 (OHU08_13665) clpP 3130902..3131507 (-) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHU08_RS13675 (OHU08_13670) tig 3131932..3133317 (-) 1386 WP_164369328.1 trigger factor -
  OHU08_RS13690 (OHU08_13685) - 3134050..3134244 (-) 195 WP_016435177.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24954.37 Da        Isoelectric Point: 4.5652

>NTDB_id=654492 OHU08_RS13665 WP_081217263.1 3130104..3130784(-) (clpP) [Streptomyces sp. NBC_00197]
MNDFPGSGLFARTEAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=654492 OHU08_RS13665 WP_081217263.1 3130104..3130784(-) (clpP) [Streptomyces sp. NBC_00197]
GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACTGAGGCCGAGTACACCGGTCCTCGTGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTATGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCAGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGCACCCCGG
GCAAGCGCATGGCGCTCCCGAACGCCCGTGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAGATCGCCGCCAACGAGATCCTCCGGATGCGCTCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCTGAGGACGCGCTCGCGTACGGCTTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACTCGGCGGTTGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

45.729

88.053

0.403
  clpP Lactococcus lactis subsp. cremoris KW2

45.729

88.053

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.724

88.053

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389