Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | L5I23_RS01935 | Genome accession | NZ_CP091897 |
| Coordinates | 379246..379704 (+) | Length | 152 a.a. |
| NCBI ID | WP_002365911.1 | Uniprot ID | Q8VT46 |
| Organism | Enterococcus faecalis strain 119-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 370834..429978 | 379246..379704 | within | 0 |
Gene organization within MGE regions
Location: 370834..429978
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L5I23_RS01870 (L5I23_01870) | prgU | 371387..371743 (+) | 357 | WP_010714280.1 | pheromone response system RNA-binding regulator PrgU | - |
| L5I23_RS01875 (L5I23_01875) | - | 371765..372151 (+) | 387 | WP_002377929.1 | hypothetical protein | - |
| L5I23_RS01880 (L5I23_01880) | - | 372297..372557 (+) | 261 | WP_002370667.1 | hypothetical protein | - |
| L5I23_RS01885 (L5I23_01885) | - | 372568..373446 (+) | 879 | WP_002377931.1 | hypothetical protein | - |
| L5I23_RS01890 (L5I23_01890) | - | 373466..374326 (+) | 861 | WP_010710128.1 | LPXTG cell wall anchor domain-containing protein | - |
| L5I23_RS01895 (L5I23_01895) | - | 374352..375622 (+) | 1271 | Protein_351 | CHAP domain-containing protein | - |
| L5I23_RS01900 (L5I23_01900) | - | 375625..376242 (+) | 618 | WP_002377936.1 | hypothetical protein | - |
| L5I23_RS01905 (L5I23_01905) | - | 376226..376642 (+) | 417 | WP_002401419.1 | thioredoxin domain-containing protein | - |
| L5I23_RS01910 (L5I23_01910) | - | 376642..376956 (+) | 315 | WP_002360796.1 | hypothetical protein | - |
| L5I23_RS01915 (L5I23_01915) | - | 376949..377983 (+) | 1035 | WP_002403100.1 | conjugal transfer protein | - |
| L5I23_RS01920 (L5I23_01920) | - | 377988..378248 (+) | 261 | WP_010706916.1 | hypothetical protein | - |
| L5I23_RS01925 (L5I23_01925) | - | 378248..378637 (+) | 390 | WP_002360791.1 | TcpE family conjugal transfer membrane protein | - |
| L5I23_RS01930 (L5I23_01930) | - | 378669..379151 (+) | 483 | WP_002377938.1 | hypothetical protein | - |
| L5I23_RS01935 (L5I23_01935) | ssb | 379246..379704 (+) | 459 | WP_002365911.1 | single-stranded DNA-binding protein | Machinery gene |
| L5I23_RS01940 (L5I23_01940) | - | 379809..382301 (+) | 2493 | WP_002377939.1 | ATP-binding protein | - |
| L5I23_RS01945 (L5I23_01945) | - | 382258..382656 (+) | 399 | WP_002370287.1 | lipocalin-like domain-containing protein | - |
| L5I23_RS01950 (L5I23_01950) | - | 382669..385014 (+) | 2346 | WP_002377940.1 | CD3337/EF1877 family mobilome membrane protein | - |
| L5I23_RS01955 (L5I23_01955) | - | 385001..387259 (+) | 2259 | WP_010710132.1 | type IV secretory system conjugative DNA transfer family protein | - |
| L5I23_RS01960 (L5I23_01960) | - | 387782..388567 (+) | 786 | WP_002360778.1 | replication-relaxation family protein | - |
| L5I23_RS01965 (L5I23_01965) | - | 388573..389061 (+) | 489 | WP_010710133.1 | hypothetical protein | - |
| L5I23_RS01970 (L5I23_01970) | - | 389653..389919 (+) | 267 | WP_002377947.1 | hypothetical protein | - |
| L5I23_RS01975 (L5I23_01975) | - | 389952..390452 (+) | 501 | WP_002360775.1 | DnaJ domain-containing protein | - |
| L5I23_RS01980 (L5I23_01980) | - | 390465..390713 (+) | 249 | WP_002360773.1 | DUF3850 domain-containing protein | - |
| L5I23_RS01985 (L5I23_01985) | - | 390789..391205 (+) | 417 | WP_010710134.1 | single-stranded DNA-binding protein | - |
| L5I23_RS01990 (L5I23_01990) | - | 391229..391813 (+) | 585 | WP_002377949.1 | thermonuclease family protein | - |
| L5I23_RS01995 (L5I23_01995) | - | 391924..392190 (+) | 267 | WP_002369771.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| L5I23_RS02000 (L5I23_02000) | - | 392183..392458 (+) | 276 | WP_002360769.1 | type II toxin-antitoxin system YafQ family toxin | - |
| L5I23_RS02005 (L5I23_02005) | - | 392649..393293 (-) | 645 | WP_002377952.1 | IS6 family transposase | - |
| L5I23_RS02010 (L5I23_02010) | - | 393426..394308 (+) | 883 | Protein_374 | IS256 family transposase | - |
| L5I23_RS02015 (L5I23_02015) | - | 394613..395650 (-) | 1038 | WP_002355369.1 | PTS sugar transporter subunit IIC | - |
| L5I23_RS02020 (L5I23_02020) | - | 395676..396614 (-) | 939 | WP_002370935.1 | 2-dehydropantoate 2-reductase | - |
| L5I23_RS02025 (L5I23_02025) | - | 396742..397011 (-) | 270 | Protein_377 | LPXTG cell wall anchor domain-containing protein | - |
| L5I23_RS02030 (L5I23_02030) | - | 397101..397286 (+) | 186 | WP_002358660.1 | hypothetical protein | - |
| L5I23_RS02035 (L5I23_02035) | - | 397318..397926 (+) | 609 | Protein_379 | IS6 family transposase | - |
| L5I23_RS02040 (L5I23_02040) | bsh | 398595..399569 (-) | 975 | WP_002355428.1 | choloylglycine hydrolase | - |
| L5I23_RS02045 (L5I23_02045) | - | 399793..400437 (+) | 645 | WP_002377952.1 | IS6 family transposase | - |
| L5I23_RS02050 (L5I23_02050) | - | 400610..400924 (+) | 315 | WP_002403043.1 | hypothetical protein | - |
| L5I23_RS02055 (L5I23_02055) | cylR2 | 401262..401462 (-) | 201 | WP_002370931.1 | cytolysin regulator CylR2 | - |
| L5I23_RS02060 (L5I23_02060) | cylL-L | 401866..402072 (+) | 207 | WP_002358485.1 | lanthipeptide cytolysin subunit CylL-L | - |
| L5I23_RS02065 (L5I23_02065) | cylL-S | 402106..402297 (+) | 192 | WP_002358181.1 | lanthipeptide cytolysin subunit CylL-S | - |
| L5I23_RS02070 (L5I23_02070) | - | 402358..405339 (+) | 2982 | WP_002370929.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| L5I23_RS02075 (L5I23_02075) | - | 405351..407495 (+) | 2145 | WP_002370927.1 | peptidase domain-containing ABC transporter | - |
| L5I23_RS02080 (L5I23_02080) | - | 407492..408730 (+) | 1239 | WP_002368283.1 | S8 family serine peptidase | - |
| L5I23_RS02085 (L5I23_02085) | - | 408803..409714 (+) | 912 | WP_227264185.1 | site-2 protease family protein | - |
| L5I23_RS02090 (L5I23_02090) | - | 410067..410630 (+) | 564 | WP_002370925.1 | hypothetical protein | - |
| L5I23_RS02095 (L5I23_02095) | - | 411067..411534 (+) | 468 | WP_002370921.1 | hypothetical protein | - |
| L5I23_RS02100 (L5I23_02100) | - | 411612..412193 (+) | 582 | WP_002401490.1 | hypothetical protein | - |
| L5I23_RS02105 (L5I23_02105) | - | 412288..412494 (+) | 207 | WP_229017897.1 | S41 family peptidase | - |
| L5I23_RS02110 (L5I23_02110) | amaP | 412764..413330 (+) | 567 | WP_010706722.1 | alkaline shock response membrane anchor protein AmaP | - |
| L5I23_RS02115 (L5I23_02115) | - | 413347..413538 (+) | 192 | WP_002358517.1 | DUF2273 domain-containing protein | - |
| L5I23_RS02120 (L5I23_02120) | - | 413567..414103 (+) | 537 | WP_002358518.1 | Asp23/Gls24 family envelope stress response protein | - |
| L5I23_RS02125 (L5I23_02125) | - | 414378..419999 (+) | 5622 | WP_108095647.1 | Rib/alpha-like domain-containing protein | - |
| L5I23_RS02130 (L5I23_02130) | - | 420199..421407 (+) | 1209 | WP_002358521.1 | YSIRK-targeted surface antigen transcriptional regulator | - |
| L5I23_RS02135 (L5I23_02135) | - | 421537..421953 (+) | 417 | WP_002358522.1 | hypothetical protein | - |
| L5I23_RS02140 (L5I23_02140) | - | 422089..422190 (-) | 102 | Protein_400 | IS30 family transposase | - |
| L5I23_RS02145 (L5I23_02145) | - | 422178..422915 (+) | 738 | WP_002401428.1 | hypothetical protein | - |
| L5I23_RS02150 (L5I23_02150) | - | 422961..423581 (-) | 621 | WP_033591050.1 | recombinase family protein | - |
| L5I23_RS02155 (L5I23_02155) | - | 423765..424384 (+) | 620 | Protein_403 | recombinase family protein | - |
| L5I23_RS02160 (L5I23_02160) | - | 425131..425949 (-) | 819 | WP_002358531.1 | MurR/RpiR family transcriptional regulator | - |
| L5I23_RS02165 (L5I23_02165) | - | 426104..426811 (+) | 708 | WP_002358533.1 | N-acetylmannosamine-6-phosphate 2-epimerase | - |
| L5I23_RS02170 (L5I23_02170) | - | 426804..428306 (+) | 1503 | WP_002358534.1 | PTS transporter subunit EIIC | - |
| L5I23_RS02175 (L5I23_02175) | - | 428317..428799 (+) | 483 | WP_002358535.1 | PTS sugar transporter subunit IIA | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 17179.08 Da Isoelectric Point: 4.6511
>NTDB_id=654457 L5I23_RS01935 WP_002365911.1 379246..379704(+) (ssb) [Enterococcus faecalis strain 119-1]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=654457 L5I23_RS01935 WP_002365911.1 379246..379704(+) (ssb) [Enterococcus faecalis strain 119-1]
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.471 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.283 |
100 |
0.572 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
69.737 |
0.395 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50 |
76.316 |
0.382 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
53.774 |
69.737 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
49.138 |
76.316 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus mitis SK321 |
48.276 |
76.316 |
0.368 |