Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG965_RS15830 Genome accession   NZ_CP108106
Coordinates   3533969..3534586 (-) Length   205 a.a.
NCBI ID   WP_361386536.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00224     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3528969..3539586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG965_RS15815 (OG965_15775) - 3530749..3531687 (+) 939 WP_371652717.1 hypothetical protein -
  OG965_RS15820 (OG965_15780) clpX 3531761..3533053 (-) 1293 WP_371652718.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG965_RS15825 (OG965_15785) clpP 3533210..3533887 (-) 678 WP_306822805.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG965_RS15830 (OG965_15790) clpP 3533969..3534586 (-) 618 WP_361386536.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG965_RS15835 (OG965_15795) tig 3534919..3536307 (-) 1389 WP_371652719.1 trigger factor -
  OG965_RS15850 (OG965_15810) - 3536915..3537109 (-) 195 WP_101388310.1 hypothetical protein -
  OG965_RS15855 (OG965_15815) - 3537238..3537675 (-) 438 WP_371652720.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21782.71 Da        Isoelectric Point: 4.5749

>NTDB_id=653849 OG965_RS15830 WP_361386536.1 3533969..3534586(-) (clpP) [Streptomyces sp. NBC_00224]
MTNLMPYAAGEPSLGGGLGDHVYNRLLNERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAIYD
TMQYIPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGIGGTASDIKIQAEYLLRTKTRMAEITARHSG
QTVETIIRDGDRDRWYTAEEAKEYGLIDDIMAHAAGVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=653849 OG965_RS15830 WP_361386536.1 3533969..3534586(-) (clpP) [Streptomyces sp. NBC_00224]
GTGACGAATCTGATGCCTTACGCCGCCGGCGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CAACGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTCCTCCTCCTGG
CCGCCGAGCCGGAGAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGATCTACGAC
ACCATGCAGTACATCCCGAACGACGTGGTCACGATCGGTATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCACCGG
CGGCACCGCCGGCAAGCGCTTCGCGCTGCCGAACACCGACATCCTGATGCACCAGGGTTCCGCCGGCATCGGCGGCACCG
CCTCGGACATCAAGATCCAGGCCGAGTACCTGCTGCGTACGAAGACGCGCATGGCGGAGATCACCGCCCGCCACTCGGGC
CAGACGGTCGAGACGATCATCCGCGACGGCGACCGCGACCGCTGGTACACGGCGGAGGAGGCCAAGGAGTACGGCCTCAT
CGACGACATCATGGCCCACGCGGCCGGTGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.646

93.659

0.502
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.083

93.659

0.488
  clpP Lactococcus lactis subsp. cremoris KW2

50.777

94.146

0.478
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.259

94.146

0.473
  clpP Streptococcus mutans UA159

48.969

94.634

0.463
  clpP Streptococcus pneumoniae R6

48.705

94.146

0.459
  clpP Streptococcus pneumoniae TIGR4

48.705

94.146

0.459
  clpP Streptococcus thermophilus LMG 18311

48.705

94.146

0.459
  clpP Streptococcus thermophilus LMD-9

48.705

94.146

0.459
  clpP Streptococcus pyogenes JRS4

49.215

93.171

0.459
  clpP Streptococcus pyogenes MGAS315

49.215

93.171

0.459
  clpP Streptococcus pneumoniae D39

48.705

94.146

0.459
  clpP Streptococcus pneumoniae Rx1

48.705

94.146

0.459