Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG965_RS15825 Genome accession   NZ_CP108106
Coordinates   3533210..3533887 (-) Length   225 a.a.
NCBI ID   WP_306822805.1    Uniprot ID   A0ABV6TRF2
Organism   Streptomyces sp. NBC_00224     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3528210..3538887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG965_RS15815 (OG965_15775) - 3530749..3531687 (+) 939 WP_371652717.1 hypothetical protein -
  OG965_RS15820 (OG965_15780) clpX 3531761..3533053 (-) 1293 WP_371652718.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG965_RS15825 (OG965_15785) clpP 3533210..3533887 (-) 678 WP_306822805.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG965_RS15830 (OG965_15790) clpP 3533969..3534586 (-) 618 WP_361386536.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG965_RS15835 (OG965_15795) tig 3534919..3536307 (-) 1389 WP_371652719.1 trigger factor -
  OG965_RS15850 (OG965_15810) - 3536915..3537109 (-) 195 WP_101388310.1 hypothetical protein -
  OG965_RS15855 (OG965_15815) - 3537238..3537675 (-) 438 WP_371652720.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24669.03 Da        Isoelectric Point: 4.5163

>NTDB_id=653848 OG965_RS15825 WP_306822805.1 3533210..3533887(-) (clpP) [Streptomyces sp. NBC_00224]
MVNPDMQNNLSASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSDL
EIAANEILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKTTSAAAA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=653848 OG965_RS15825 WP_306822805.1 3533210..3533887(-) (clpP) [Streptomyces sp. NBC_00224]
ATGGTGAACCCCGACATGCAGAACAACCTCTCCGCAAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTACATCGT
GCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGAC
CGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTTCGT
GAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTGCTGCTCGCCGCGGGCACCCCCGGCA
AGCGCATGGCGCTGCCCAACGCGCGCGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGCGAGCAGCTCTCCGACCTG
GAGATCGCGGCCAACGAGATCCTGCGCATGCGCAGCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCCATCGA
GAAGATCCGGGACGACATCGAGCGGGACAAGATCCTCACCGCCGAGGACGCCCTGGCGTACGGCCTGGTCGACCAGATCG
TGTCGACCCGCAAGACGACGTCGGCCGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

84.444

0.427
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.619

84

0.4
  clpP Streptococcus thermophilus LMD-9

44.845

86.222

0.387
  clpP Streptococcus thermophilus LMG 18311

44.845

86.222

0.387
  clpP Streptococcus pyogenes MGAS315

45.789

84.444

0.387
  clpP Streptococcus pyogenes JRS4

45.789

84.444

0.387
  clpP Streptococcus mutans UA159

45.263

84.444

0.382
  clpP Streptococcus pneumoniae Rx1

44.503

84.889

0.378
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.889

0.378
  clpP Streptococcus pneumoniae R6

44.503

84.889

0.378
  clpP Streptococcus pneumoniae TIGR4

44.503

84.889

0.378
  clpP Streptococcus pneumoniae D39

44.503

84.889

0.378
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.889

0.373