Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG764_RS23835 Genome accession   NZ_CP108095
Coordinates   5411764..5412432 (+) Length   222 a.a.
NCBI ID   WP_328970460.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5406764..5417432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS23800 (OG764_23795) - 5406800..5407942 (+) 1143 WP_328970455.1 PP2C family protein-serine/threonine phosphatase -
  OG764_RS23805 (OG764_23800) - 5407974..5408423 (+) 450 WP_328970456.1 HD domain-containing protein -
  OG764_RS23810 (OG764_23805) - 5408599..5408793 (+) 195 WP_328970457.1 hypothetical protein -
  OG764_RS23825 (OG764_23820) tig 5409461..5410855 (+) 1395 WP_328970458.1 trigger factor -
  OG764_RS23830 (OG764_23825) clpP 5411099..5411716 (+) 618 WP_328970459.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG764_RS23835 (OG764_23830) clpP 5411764..5412432 (+) 669 WP_328970460.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG764_RS23840 (OG764_23835) clpX 5412586..5413872 (+) 1287 WP_328970461.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG764_RS23845 (OG764_23840) - 5414141..5415118 (-) 978 WP_328970462.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24410.77 Da        Isoelectric Point: 4.6814

>NTDB_id=653543 OG764_RS23835 WP_328970460.1 5411764..5412432(+) (clpP) [Streptomyces sp. NBC_00239]
MVNTHMQNNLSASALYTGAQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDL
EIAANEILRMRDQLESMLAKHSSTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKMNNG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=653543 OG764_RS23835 WP_328970460.1 5411764..5412432(+) (clpP) [Streptomyces sp. NBC_00239]
ATGGTGAACACCCATATGCAGAACAACCTCTCCGCGAGCGCTCTCTACACCGGTGCGCAGGTGGACAACCGTTACGTCGT
GCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAAGAGCGCGTGATCT
TCCTCGGTGTGCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGAC
CGCGACATCTCGATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCGATCTACGACACCATGCAGTTCGT
GAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGCACCCCCGGCA
AGCGCATGGCCCTGCCGAACGCCCGCGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGTGAGCAGCTCTCCGACCTG
GAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGTCCATGCTGGCCAAGCACTCGTCCACGCCGATCGA
GAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACCAGATCG
TCTCCACCCGCAAGATGAACAACGGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

85.586

0.45
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

84.685

0.419
  clpP Streptococcus thermophilus LMG 18311

45.641

87.838

0.401
  clpP Streptococcus thermophilus LMD-9

45.641

87.838

0.401
  clpP Streptococcus pyogenes JRS4

45.641

87.838

0.401
  clpP Streptococcus pyogenes MGAS315

45.641

87.838

0.401
  clpP Streptococcus pneumoniae D39

44.898

88.288

0.396
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

88.288

0.396
  clpP Streptococcus pneumoniae Rx1

44.898

88.288

0.396
  clpP Streptococcus pneumoniae R6

44.898

88.288

0.396
  clpP Streptococcus pneumoniae TIGR4

44.898

88.288

0.396
  clpP Streptococcus mutans UA159

45.128

87.838

0.396
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

88.288

0.387