Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG764_RS23830 Genome accession   NZ_CP108095
Coordinates   5411099..5411716 (+) Length   205 a.a.
NCBI ID   WP_328970459.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5406099..5416716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS23800 (OG764_23795) - 5406800..5407942 (+) 1143 WP_328970455.1 PP2C family protein-serine/threonine phosphatase -
  OG764_RS23805 (OG764_23800) - 5407974..5408423 (+) 450 WP_328970456.1 HD domain-containing protein -
  OG764_RS23810 (OG764_23805) - 5408599..5408793 (+) 195 WP_328970457.1 hypothetical protein -
  OG764_RS23825 (OG764_23820) tig 5409461..5410855 (+) 1395 WP_328970458.1 trigger factor -
  OG764_RS23830 (OG764_23825) clpP 5411099..5411716 (+) 618 WP_328970459.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG764_RS23835 (OG764_23830) clpP 5411764..5412432 (+) 669 WP_328970460.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG764_RS23840 (OG764_23835) clpX 5412586..5413872 (+) 1287 WP_328970461.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG764_RS23845 (OG764_23840) - 5414141..5415118 (-) 978 WP_328970462.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21731.69 Da        Isoelectric Point: 4.7974

>NTDB_id=653542 OG764_RS23830 WP_328970459.1 5411099..5411716(+) (clpP) [Streptomyces sp. NBC_00239]
MTNLMPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDEIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAVYD
TMQYIPNDVVTIGMGMAASMGQFLLTGGAKGKRFALPNTDILMHQGSAGIGGTASDIKIQAQYLLRTKQRMAEITAHHSG
QTVEAIIRDGDRDRWFTAEEAKEYGLIDQIISAASNVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=653542 OG764_RS23830 WP_328970459.1 5411099..5411716(+) (clpP) [Streptomyces sp. NBC_00239]
GTGACGAATCTGATGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CGGCGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACGGCGCAGCTCCTCCTCCTGG
CCGCCGAGCCGGAGAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGGTCTACGAC
ACCATGCAGTACATCCCGAACGACGTCGTCACCATCGGTATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGG
CGGCGCCAAGGGCAAGCGCTTCGCGCTCCCGAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGCACCG
CGTCGGACATCAAGATCCAGGCCCAGTACCTGCTGCGCACCAAGCAGCGCATGGCCGAGATCACCGCGCACCACTCGGGC
CAGACCGTCGAGGCGATCATCCGCGACGGTGACCGCGACCGCTGGTTCACGGCGGAGGAGGCCAAGGAGTACGGCCTCAT
CGACCAGATCATCTCGGCCGCGTCCAACGTCCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.403

93.171

0.498
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.083

93.659

0.488
  clpP Lactococcus lactis subsp. cremoris KW2

49.231

95.122

0.468
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

48.718

95.122

0.463
  clpP Streptococcus mutans UA159

48.958

93.659

0.459
  clpP Streptococcus pyogenes MGAS315

47.644

93.171

0.444
  clpP Streptococcus pyogenes JRS4

47.644

93.171

0.444
  clpP Streptococcus pneumoniae R6

50.282

86.341

0.434
  clpP Streptococcus pneumoniae D39

50.282

86.341

0.434
  clpP Streptococcus pneumoniae Rx1

50.282

86.341

0.434
  clpP Streptococcus pneumoniae TIGR4

50.282

86.341

0.434
  clpP Streptococcus thermophilus LMG 18311

50

84.878

0.424
  clpP Streptococcus thermophilus LMD-9

50

84.878

0.424