Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT59_RS30665 Genome accession   NZ_CP108094
Coordinates   6888845..6889525 (+) Length   226 a.a.
NCBI ID   WP_266827428.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00243     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6883845..6894525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT59_RS30640 (OHT59_30650) - 6885436..6885630 (+) 195 WP_266462266.1 hypothetical protein -
  OHT59_RS30655 (OHT59_30665) tig 6886301..6887686 (+) 1386 WP_326723114.1 trigger factor -
  OHT59_RS30660 (OHT59_30670) clpP 6888122..6888727 (+) 606 WP_186001018.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT59_RS30665 (OHT59_30675) clpP 6888845..6889525 (+) 681 WP_266827428.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT59_RS30670 (OHT59_30680) clpX 6889686..6890972 (+) 1287 WP_326723115.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT59_RS30675 (OHT59_30685) - 6891062..6892039 (-) 978 WP_326723116.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24978.44 Da        Isoelectric Point: 4.6288

>NTDB_id=653463 OHT59_RS30665 WP_266827428.1 6888845..6889525(+) (clpP) [Streptomyces sp. NBC_00243]
MNDFPGSGLFARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNNAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=653463 OHT59_RS30665 WP_266827428.1 6888845..6889525(+) (clpP) [Streptomyces sp. NBC_00243]
GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGCGATATTTCGGTCTACATCAACAGCCCTGGTGGCTCATTCACGGCGCTCACGGCCATTTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGTCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCACTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAAATCGCTGCGAACGAGATCCTCCGGATGCGTGCGCAGCTCGAAGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCTGAGGACGCGCTGGCGTACGGCTTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACAACGCGGTCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.776

88.938

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.781

88.938

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385