Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT59_RS30660 Genome accession   NZ_CP108094
Coordinates   6888122..6888727 (+) Length   201 a.a.
NCBI ID   WP_186001018.1    Uniprot ID   A0A7T7RHN7
Organism   Streptomyces sp. NBC_00243     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6883122..6893727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT59_RS30630 (OHT59_30640) - 6883154..6883606 (+) 453 WP_326723112.1 HD domain-containing protein -
  OHT59_RS30635 (OHT59_30645) - 6883619..6884824 (-) 1206 WP_326723113.1 acyltransferase family protein -
  OHT59_RS30640 (OHT59_30650) - 6885436..6885630 (+) 195 WP_266462266.1 hypothetical protein -
  OHT59_RS30655 (OHT59_30665) tig 6886301..6887686 (+) 1386 WP_326723114.1 trigger factor -
  OHT59_RS30660 (OHT59_30670) clpP 6888122..6888727 (+) 606 WP_186001018.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT59_RS30665 (OHT59_30675) clpP 6888845..6889525 (+) 681 WP_266827428.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT59_RS30670 (OHT59_30680) clpX 6889686..6890972 (+) 1287 WP_326723115.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT59_RS30675 (OHT59_30685) - 6891062..6892039 (-) 978 WP_326723116.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21249.24 Da        Isoelectric Point: 4.7892

>NTDB_id=653462 OHT59_RS30660 WP_186001018.1 6888122..6888727(+) (clpP) [Streptomyces sp. NBC_00243]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPEKDIYLYINSPGGSITAGMAIYDTMQYI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITRDSDRDRWFDPIEAKAYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=653462 OHT59_RS30660 WP_186001018.1 6888122..6888727(+) (clpP) [Streptomyces sp. NBC_00243]
ATGCCCACAGCTGCCGGCGACCCTATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGTTGCTGCTCCTTGCCTCCGACCCGGAGA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACCGCCGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCGGCCGGCCTCGCCGGCTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCCTTCCACACCGGCCAGACCGTGGAGCAG
ATCACCCGCGACTCGGACCGGGACCGCTGGTTCGACCCGATCGAGGCCAAGGCGTACGGCCTCATCGACGACATCATGCC
CACCGCTGCCGGAATGCCTGGCGGTGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7RHN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.615

93.035

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

94.03

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

94.03

0.483
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.023

86.567

0.468
  clpP Streptococcus pyogenes MGAS315

53.179

86.07

0.458
  clpP Streptococcus pyogenes JRS4

53.179

86.07

0.458
  clpP Streptococcus thermophilus LMG 18311

51.445

86.07

0.443
  clpP Streptococcus thermophilus LMD-9

51.445

86.07

0.443
  clpP Streptococcus pneumoniae Rx1

50.867

86.07

0.438
  clpP Streptococcus pneumoniae D39

50.867

86.07

0.438
  clpP Streptococcus pneumoniae R6

50.867

86.07

0.438
  clpP Streptococcus pneumoniae TIGR4

50.867

86.07

0.438