Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG259_RS27325 Genome accession   NZ_CP108088
Coordinates   6041321..6041983 (+) Length   220 a.a.
NCBI ID   WP_328944659.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6036321..6046983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS27295 (OG259_27300) - 6036565..6036759 (+) 195 WP_266891893.1 hypothetical protein -
  OG259_RS27300 (OG259_27305) - 6036833..6038398 (-) 1566 WP_328944657.1 hypothetical protein -
  OG259_RS27315 (OG259_27320) tig 6039014..6040399 (+) 1386 WP_328944658.1 trigger factor -
  OG259_RS27320 (OG259_27325) clpP 6040640..6041257 (+) 618 WP_266891887.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG259_RS27325 (OG259_27330) clpP 6041321..6041983 (+) 663 WP_328944659.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG259_RS27330 (OG259_27335) clpX 6042140..6043423 (+) 1284 WP_024755522.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG259_RS27335 (OG259_27340) - 6043493..6044452 (-) 960 WP_328944660.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24143.47 Da        Isoelectric Point: 4.7041

>NTDB_id=653306 OG259_RS27325 WP_328944659.1 6041321..6041983(+) (clpP) [Streptomyces sp. NBC_00250]
MQNNLSASGLYTGAPMDNRYVVPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI
YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAAR
EILRMRSQLEEMLAKHSSTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKSTASAER

Nucleotide


Download         Length: 663 bp        

>NTDB_id=653306 OG259_RS27325 WP_328944659.1 6041321..6041983(+) (clpP) [Streptomyces sp. NBC_00250]
ATGCAGAACAACCTCTCCGCGAGCGGCCTCTACACCGGCGCGCCGATGGACAACCGCTACGTCGTGCCGCGCTTCGTCGA
GCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGA
TCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGTGACATCTCCATC
TACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCGATCTACGACACCATGCAGTTCGTGAAGCCGGACATCCA
GACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGTACGCCCGGCAAGCGGATGGCCCTGC
CGAACGCCCGCGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGTGAGCAGCTCTCCGACCTGGAGATCGCGGCCCGC
GAGATCCTGCGTATGCGCAGCCAGCTCGAGGAGATGCTGGCCAAGCACTCCTCGACGCCGATCGAGAAGATCCGCGACGA
CATCGAGCGTGACAAGATCCTCACGGCCGAGGACGCCCTGGCGTACGGCCTGGTCGATCAGATCGTCTCGACCCGTAAGA
GCACGGCCTCCGCGGAGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(31-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

86.364

0.445
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

85.455

0.418
  clpP Streptococcus thermophilus LMD-9

45.361

88.182

0.4
  clpP Streptococcus pyogenes JRS4

45.361

88.182

0.4
  clpP Streptococcus pyogenes MGAS315

45.361

88.182

0.4
  clpP Streptococcus thermophilus LMG 18311

45.361

88.182

0.4
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

86.818

0.395
  clpP Streptococcus mutans UA159

44.845

88.182

0.395
  clpP Streptococcus pneumoniae D39

44.56

87.727

0.391
  clpP Streptococcus pneumoniae TIGR4

44.56

87.727

0.391
  clpP Streptococcus pneumoniae R6

44.56

87.727

0.391
  clpP Streptococcus pneumoniae Rx1

44.56

87.727

0.391
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

86.818

0.386