Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG259_RS27320 Genome accession   NZ_CP108088
Coordinates   6040640..6041257 (+) Length   205 a.a.
NCBI ID   WP_266891887.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6035640..6046257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS27295 (OG259_27300) - 6036565..6036759 (+) 195 WP_266891893.1 hypothetical protein -
  OG259_RS27300 (OG259_27305) - 6036833..6038398 (-) 1566 WP_328944657.1 hypothetical protein -
  OG259_RS27315 (OG259_27320) tig 6039014..6040399 (+) 1386 WP_328944658.1 trigger factor -
  OG259_RS27320 (OG259_27325) clpP 6040640..6041257 (+) 618 WP_266891887.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG259_RS27325 (OG259_27330) clpP 6041321..6041983 (+) 663 WP_328944659.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG259_RS27330 (OG259_27335) clpX 6042140..6043423 (+) 1284 WP_024755522.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG259_RS27335 (OG259_27340) - 6043493..6044452 (-) 960 WP_328944660.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21740.70 Da        Isoelectric Point: 4.8204

>NTDB_id=653305 OG259_RS27320 WP_266891887.1 6040640..6041257(+) (clpP) [Streptomyces sp. NBC_00250]
MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDEIANKITAQMLLLAAEPEKDIFLYINSPGGSVTAGMAVYD
TMQFIPNDVVTIGMGMAASMGQFLLTAGTPGKRFALPNTDILMHQGSAGIGGTASDIKIQAEYLLRTKKRMAEITSHHSG
QTVETIIRDGDRDRWFTADEAKDYGLIDDIITHAAGVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=653305 OG259_RS27320 WP_266891887.1 6040640..6041257(+) (clpP) [Streptomyces sp. NBC_00250]
GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CGGCGAGCGGATCATCTTCCTCGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACCGCCCAGATGCTCCTCCTGG
CCGCCGAGCCGGAGAAGGACATCTTCCTGTACATCAACAGCCCCGGCGGCTCGGTGACGGCGGGCATGGCGGTCTACGAC
ACCATGCAGTTCATCCCGAACGACGTCGTCACCATCGGTATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCACCGC
CGGCACCCCCGGCAAGCGCTTCGCGCTGCCGAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGCACCG
CCTCCGACATCAAGATCCAGGCCGAGTACCTTCTTCGCACGAAGAAGCGCATGGCCGAAATCACCTCGCACCACTCCGGC
CAGACCGTCGAGACGATCATCCGCGACGGCGACCGCGACCGCTGGTTCACCGCGGACGAGGCCAAGGACTACGGCCTCAT
CGACGACATCATCACCCACGCCGCGGGCGTTCCCGGCGGCGGCGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.491

84.39

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.474

92.683

0.459
  clpP Lactococcus lactis subsp. cremoris KW2

49.462

90.732

0.449
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

48.925

90.732

0.444
  clpP Streptococcus mutans UA159

51.429

85.366

0.439
  clpP Streptococcus thermophilus LMD-9

49.143

85.366

0.42
  clpP Streptococcus thermophilus LMG 18311

49.143

85.366

0.42
  clpP Streptococcus pyogenes MGAS315

49.133

84.39

0.415
  clpP Streptococcus pyogenes JRS4

49.133

84.39

0.415
  clpP Streptococcus pneumoniae Rx1

48

85.366

0.41
  clpP Streptococcus pneumoniae D39

48

85.366

0.41
  clpP Streptococcus pneumoniae R6

48

85.366

0.41
  clpP Streptococcus pneumoniae TIGR4

48

85.366

0.41