Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG860_RS26690 Genome accession   NZ_CP108076
Coordinates   5980106..5980714 (+) Length   202 a.a.
NCBI ID   WP_189709844.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5975106..5985714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS26660 (OG860_26660) - 5975994..5976188 (+) 195 WP_108999428.1 hypothetical protein -
  OG860_RS26665 (OG860_26665) - 5976506..5976973 (-) 468 WP_328481861.1 DUF6083 domain-containing protein -
  OG860_RS26670 (OG860_26670) - 5977487..5977707 (+) 221 Protein_5266 site-specific integrase -
  OG860_RS26685 (OG860_26685) tig 5978291..5979676 (+) 1386 WP_328481862.1 trigger factor -
  OG860_RS26690 (OG860_26690) clpP 5980106..5980714 (+) 609 WP_189709844.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG860_RS26695 (OG860_26695) clpP 5981022..5981702 (+) 681 WP_328481863.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG860_RS26700 (OG860_26700) clpX 5981884..5983173 (+) 1290 WP_020127826.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG860_RS26705 (OG860_26705) - 5983263..5984264 (-) 1002 WP_328481864.1 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21375.28 Da        Isoelectric Point: 4.6747

>NTDB_id=652847 OG860_RS26690 WP_189709844.1 5980106..5980714(+) (clpP) [Streptomyces sp. NBC_00267]
MPYAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQF
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVE
QVTRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=652847 OG860_RS26690 WP_189709844.1 5980106..5980714(+) (clpP) [Streptomyces sp. NBC_00267]
ATGCCCTACGCCGCCGGCGAGCCCTCCATCGGCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGTGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATTGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGTTCCATCACGGCCGGCATGGCGATCTACGACACGATGCAGTTC
ATCAAGAACGACGTGGTGACCATCGCCATGGGTCTCGCGGCCTCCATGGGTCAGTTCCTGCTCAGCGCGGGCACGCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGTCTGGCGGGTTCGGCCTCCGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCTCCCAGCACACCGGGCAGACGGTCGAG
CAGGTCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CCCGACGGCCGCCGGCATGCCGGGCGGCGGCGGTACCGGGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.48

84.653

0.495
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.356

94.554

0.495
  clpP Lactococcus lactis subsp. cremoris KW2

53.261

91.089

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.717

91.089

0.48
  clpP Streptococcus mutans UA159

55.491

85.644

0.475
  clpP Streptococcus pyogenes MGAS315

52.601

85.644

0.45
  clpP Streptococcus pyogenes JRS4

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMG 18311

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMD-9

52.601

85.644

0.45
  clpP Streptococcus pneumoniae Rx1

52.023

85.644

0.446
  clpP Streptococcus pneumoniae D39

52.023

85.644

0.446
  clpP Streptococcus pneumoniae R6

52.023

85.644

0.446
  clpP Streptococcus pneumoniae TIGR4

52.023

85.644

0.446