Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L5508_RS20420 Genome accession   NZ_CP091624
Coordinates   4269174..4269704 (-) Length   176 a.a.
NCBI ID   WP_126524360.1    Uniprot ID   -
Organism   Salmonella enterica strain 1382     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4264174..4274704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L5508_RS20405 (L5508_20415) siiC 4264659..4265978 (-) 1320 WP_126524358.1 SPI-4 type I secretion system protein SiiC -
  L5508_RS20410 (L5508_20420) - 4265968..4267356 (-) 1389 WP_000875180.1 MotA/TolQ/ExbB proton channel family protein -
  L5508_RS20415 (L5508_20425) siiA 4267353..4267985 (-) 633 WP_126524359.1 SPI-4 type I secretion system auxiliary protein SiiA -
  L5508_RS20420 (L5508_20430) ssb 4269174..4269704 (-) 531 WP_126524360.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L5508_RS20425 (L5508_20435) uvrA 4269952..4272777 (+) 2826 WP_000357725.1 excinuclease ABC subunit UvrA -
  L5508_RS20430 (L5508_20440) - 4272909..4273364 (+) 456 WP_126524361.1 hypothetical protein -
  L5508_RS20435 (L5508_20445) - 4273351..4273689 (+) 339 WP_000146597.1 hypothetical protein -
  L5508_RS20440 (L5508_20450) - 4273690..4274046 (-) 357 WP_000155665.1 MmcQ/YjbR family DNA-binding protein -
  L5508_RS20445 (L5508_20455) - 4274049..4274465 (-) 417 WP_000270393.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19104.17 Da        Isoelectric Point: 5.2456

>NTDB_id=652848 L5508_RS20420 WP_126524360.1 4269174..4269704(-) (ssb) [Salmonella enterica strain 1382]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGSAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=652848 L5508_RS20420 WP_126524360.1 4269174..4269704(-) (ssb) [Salmonella enterica strain 1382]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCAGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.429

100

0.739
  ssb Glaesserella parasuis strain SC1401

59.563

100

0.619
  ssb Neisseria meningitidis MC58

45.81

100

0.466
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.466