Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG860_RS26695 Genome accession   NZ_CP108076
Coordinates   5981022..5981702 (+) Length   226 a.a.
NCBI ID   WP_328481863.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5976022..5986702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS26665 (OG860_26665) - 5976506..5976973 (-) 468 WP_328481861.1 DUF6083 domain-containing protein -
  OG860_RS26670 (OG860_26670) - 5977487..5977707 (+) 221 Protein_5266 site-specific integrase -
  OG860_RS26685 (OG860_26685) tig 5978291..5979676 (+) 1386 WP_328481862.1 trigger factor -
  OG860_RS26690 (OG860_26690) clpP 5980106..5980714 (+) 609 WP_189709844.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG860_RS26695 (OG860_26695) clpP 5981022..5981702 (+) 681 WP_328481863.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG860_RS26700 (OG860_26700) clpX 5981884..5983173 (+) 1290 WP_020127826.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG860_RS26705 (OG860_26705) - 5983263..5984264 (-) 1002 WP_328481864.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24977.39 Da        Isoelectric Point: 4.5652

>NTDB_id=652848 OG860_RS26695 WP_328481863.1 5981022..5981702(+) (clpP) [Streptomyces sp. NBC_00267]
MNDFPGSGLFARTEAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLVDQIISTRKLNNNSLV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=652848 OG860_RS26695 WP_328481863.1 5981022..5981702(+) (clpP) [Streptomyces sp. NBC_00267]
GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACCGAGGCCGAGTACACCGGCCCTCGCGCCGAATCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGCGAGTACGACCCCTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGTGGTTCCTTCACGGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGTCAGGCGGCCTCCGCCGCCGCGATCCTGCTCGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAAATCCTCCGGATGCGTGCGCAGCTGGAGGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGTACGGCCTGGTCGACCAGA
TCATCTCCACGCGCAAGCTGAACAACAACTCGCTCGTTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.776

88.938

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.781

88.938

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385