Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG960_RS16280 Genome accession   NZ_CP108059
Coordinates   3709132..3709740 (-) Length   202 a.a.
NCBI ID   WP_189149023.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3704132..3714740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS16265 (OG960_16335) - 3705849..3706811 (+) 963 WP_371659960.1 hypothetical protein -
  OG960_RS16270 (OG960_16340) clpX 3706914..3708200 (-) 1287 WP_327694890.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG960_RS16275 (OG960_16345) clpP 3708384..3709082 (-) 699 WP_329276868.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG960_RS16280 (OG960_16350) clpP 3709132..3709740 (-) 609 WP_189149023.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG960_RS16285 (OG960_16355) tig 3710195..3711589 (-) 1395 WP_371659961.1 trigger factor -
  OG960_RS16300 (OG960_16370) - 3712185..3712379 (-) 195 WP_006383514.1 hypothetical protein -
  OG960_RS16305 (OG960_16375) - 3712584..3713057 (-) 474 WP_371659962.1 HD domain-containing protein -
  OG960_RS16310 (OG960_16380) - 3713257..3714435 (-) 1179 WP_371659963.1 PP2C family protein-serine/threonine phosphatase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21289.20 Da        Isoelectric Point: 4.6747

>NTDB_id=652368 OG960_RS16280 WP_189149023.1 3709132..3709740(-) (clpP) [Streptomyces sp. NBC_00280]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIYDTMQ
FIKNDVMTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAQHTGQTM
EQITRDSDRDRWFDPEEAKAYGLIDDVIATAAGIPGGGGTAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=652368 OG960_RS16280 WP_189149023.1 3709132..3709740(-) (clpP) [Streptomyces sp. NBC_00280]
ATGCCTTCCGCCGCCGGCGAGCCTTCCATCGGCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCGCAGCTGCTGCTCCTCGCCGCCGCTGACC
CGGACAAGGACATCAACCTCTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAG
TTCATCAAGAACGACGTGATGACCATCGCCATGGGTCTCGCCGCTTCGATGGGCCAGTTCCTGCTCAGCGCGGGTACACC
CGGCAAGCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTCGCGGGTTCGGCGTCGGACA
TCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCGCGCAGCACACCGGCCAGACCATG
GAGCAGATCACCCGGGACTCGGACCGCGACCGCTGGTTCGACCCCGAGGAGGCCAAGGCGTACGGCCTCATCGACGACGT
CATCGCCACGGCCGCAGGCATCCCGGGCGGCGGCGGCACAGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.064

84.653

0.5
  clpP Lactococcus lactis subsp. cremoris KW2

52.717

91.089

0.48
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.174

91.089

0.475
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.747

90.099

0.475
  clpP Streptococcus mutans UA159

54.335

85.644

0.465
  clpP Streptococcus pyogenes MGAS315

53.757

85.644

0.46
  clpP Streptococcus pyogenes JRS4

53.757

85.644

0.46
  clpP Streptococcus pneumoniae Rx1

51.149

86.139

0.441
  clpP Streptococcus pneumoniae D39

51.149

86.139

0.441
  clpP Streptococcus pneumoniae R6

51.149

86.139

0.441
  clpP Streptococcus pneumoniae TIGR4

51.149

86.139

0.441
  clpP Streptococcus thermophilus LMG 18311

50.867

85.644

0.436
  clpP Streptococcus thermophilus LMD-9

50.867

85.644

0.436